JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAH11_chr7_21538039_21906839	0/0	a0163	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0164	4516	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0165	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0166	4516	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0167	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0168	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0169	4516	1	0	0	0	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0170	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0171	4516	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0172	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0173	4516	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0174	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0175	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0176	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0177	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0178	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0179	4516	1	0	0	0	1	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0180	4516	1	0	0	0	1	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0181	4516	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0182	4516	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0183	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0184	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0185	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0186	4516	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0187	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0188	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0189	4516	1	0	0	0	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0190	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0191	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0192	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0193	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0194	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0195	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0196	4516	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0197	4516	1	0	0	0	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0198	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0199	4516	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0200	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0201	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0202	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0203	4516	1	0	0	0	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0204	4516	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0205	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0206	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0207	4516	1	0	0	0	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0208	4516	1	0	0	0	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0209	4516	1	0	0	0	1	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0210	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0211	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0212	4516	1	0	0	0	1	0	copy fasta	DNAH11	chr7	21538039	21906839