JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAH11_chr7_21538039_21906839	0/0	a0213	4516	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0214	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0215	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0216	4516	1	0	1	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0217	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0218	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0219	4516	1	0	0	1	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0220	4516	1	0	0	0	0	1	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0221	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0222	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0223	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0224	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0225	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH11_chr7_21538039_21906839	0/0	a0226	4516	1	1	0	0	0	0	copy fasta	DNAH11	chr7	21538039	21906839
DNAH12_chr3_57288700_57549344	0/0	a0001	3960	48	8	11	17	2	10	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0002	3960	42	1	8	31	0	2	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/1	a0003	3960	25	14	5	0	2	3	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0004	3960	17	2	4	7	0	4	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0005	3960	11	0	1	10	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0006	3960	9	0	6	0	1	2	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0007	3960	8	8	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0008	3960	8	1	5	1	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0009	3960	4	2	0	0	0	2	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0010	3960	4	0	4	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0011	3960	3	3	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0012	3960	3	2	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0013	3960	3	3	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0014	3960	3	2	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0015	3960	3	0	0	0	0	3	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0016	3960	3	2	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0017	3960	3	3	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0018	3960	3	1	1	0	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0019	3960	2	2	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0020	3960	2	2	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0021	3960	2	0	0	0	0	2	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0022	3960	2	0	0	2	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	1/0	a0023	3960	2	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0024	3960	2	2	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0025	3960	2	2	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0026	3960	2	2	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0027	3960	2	2	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0028	3960	2	0	0	2	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0029	3960	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0030	3960	1	0	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0031	3960	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0032	3960	1	0	0	0	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0033	3960	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0034	3960	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0035	3960	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0036	3960	1	0	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344