JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAH12_chr3_57288700_57549344	0/0	a0037	3960	1	0	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0038	448	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0039	3960	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0040	3960	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0041	3960	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0042	3960	1	0	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0043	3960	1	0	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0044	3960	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0045	3960	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0046	3960	1	0	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0047	3960	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0048	559	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0049	3960	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0050	3960	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0051	3960	1	0	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0052	3960	1	0	0	0	1	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0053	3960	1	0	0	0	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0054	3960	1	0	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0055	3960	1	0	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0056	3960	1	0	0	0	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0057	3960	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0058	3960	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0059	3960	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0060	3960	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0061	3960	1	0	1	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0062	3960	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0063	3960	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0064	3960	1	0	0	0	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0065	3960	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0066	3960	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0067	3960	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0068	3960	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0069	3960	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0070	3960	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0071	3960	1	0	0	0	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0072	3960	1	0	0	0	0	1	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0073	3960	1	1	0	0	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH12_chr3_57288700_57549344	0/0	a0074	3960	1	0	0	1	0	0	copy fasta	DNAH12	chr3	57288700	57549344
DNAH14_chr1_224924675_225404286	0/0	a0000	0	1	0	0	0	0	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	a0001	4617	26	0	6	16	3	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	a0002	4617	16	0	5	9	0	2	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	a0003	4617	16	2	3	5	5	1	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	a0004	4617	10	1	2	5	0	2	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	a0005	4617	10	0	7	0	0	3	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	a0006	4617	6	1	1	0	1	3	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	a0007	4617	5	4	1	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	a0008	4617	5	4	1	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	a0009	18	4	4	0	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	a0010	4617	4	4	0	0	0	0	copy fasta	DNAH14	chr1	224924675	225404286
DNAH14_chr1_224924675_225404286	0/0	a0011	4617	4	0	2	0	0	2	copy fasta	DNAH14	chr1	224924675	225404286