JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	SAS	aseq	genename	chr	start	end
DNAH17_chr17_78418697_78582396	0/0	a0101	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0102	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0103	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0104	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0105	4462	1	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0106	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0107	4462	1	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0108	4462	1	0	0	1	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0109	4462	1	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0110	4462	1	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0111	4462	1	0	0	1	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0112	4462	1	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0113	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0114	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0115	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0116	4462	1	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0117	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0118	4462	1	0	0	1	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0119	4462	1	0	0	1	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0120	4462	1	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0121	4462	1	0	0	1	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0122	4462	1	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0123	4462	1	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0124	4462	1	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0125	4462	1	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0126	4462	1	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0127	4462	1	0	0	1	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0128	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0129	4462	1	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0130	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0131	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0132	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0133	4462	1	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0134	4462	1	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0135	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0136	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0137	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0138	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0139	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0140	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0141	4462	1	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	1/0	a0142	4462	1	0	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0143	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0144	4462	1	0	1	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0145	186	1	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0146	4462	1	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0147	4462	1	0	0	1	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0148	4462	1	0	0	0	1	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0149	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396
DNAH17_chr17_78418697_78582396	0/0	a0150	4462	1	1	0	0	0	copy fasta	DNAH17	chr17	78418697	78582396