JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAH1_chr3_52311319_52405492	1/0	a0001	4265	81	26	17	19	2	16	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0002	4265	11	1	2	3	2	3	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0003	4265	11	1	7	0	1	2	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0004	4265	10	9	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0005	4265	9	9	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0006	4265	6	0	4	1	1	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0007	4265	6	6	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0008	4265	3	2	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0009	4265	3	3	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0010	4265	3	3	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0011	4265	2	1	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0012	4265	2	2	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0013	4265	2	0	0	2	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0014	4265	2	0	0	2	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0015	4265	2	2	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0016	4265	2	2	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0017	4265	1	0	0	1	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0018	4265	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0019	4265	1	0	0	1	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0020	4265	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0021	4265	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0022	4265	1	0	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0023	4265	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0024	4265	1	0	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0025	4265	1	0	0	1	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0026	4265	1	0	0	1	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0027	4265	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0028	4265	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0029	4265	1	0	0	1	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0030	4265	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0031	4265	1	0	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0032	4265	1	0	0	0	0	1	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0033	4265	1	0	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0034	4265	1	0	1	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0035	4265	1	0	0	0	0	1	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/1	a0036	4265	1	0	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0037	4265	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0038	4265	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0039	4265	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0040	4265	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0041	4265	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0042	4265	1	0	0	0	0	1	copy fasta	DNAH1	chr3	52311319	52405492
DNAH1_chr3_52311319_52405492	0/0	a0043	4265	1	1	0	0	0	0	copy fasta	DNAH1	chr3	52311319	52405492
DNAH2_chr17_7712744_7838742	0/1	a0001	4427	103	32	36	11	2	21	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	1/0	a0002	4427	44	8	9	20	3	3	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0003	4427	19	2	1	16	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0004	4427	13	1	6	4	0	2	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0005	4427	6	0	0	3	0	3	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0006	4427	6	0	1	5	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0007	4427	6	0	0	5	0	1	copy fasta	DNAH2	chr17	7712744	7838742