JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAH2_chr17_7712744_7838742	0/0	a0058	4427	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0059	4427	1	1	0	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0060	4427	1	1	0	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0061	4427	1	0	0	0	1	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0062	4427	1	0	1	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0063	4427	1	1	0	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0064	4427	1	1	0	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0065	4427	1	1	0	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0066	4427	1	1	0	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0067	4427	1	1	0	0	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0068	4427	1	0	0	0	0	1	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0069	4427	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0070	4427	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH2_chr17_7712744_7838742	0/0	a0071	4427	1	0	0	1	0	0	copy fasta	DNAH2	chr17	7712744	7838742
DNAH3_chr16_20928111_21155846	1/1	a0001	4070	86	20	11	40	5	8	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0002	4070	22	4	4	10	0	4	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0003	4070	16	2	8	2	1	3	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0004	4070	15	0	2	12	0	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0005	4070	10	10	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0006	4070	6	0	1	4	0	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0007	4070	6	6	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0008	4070	6	1	3	0	0	2	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0009	4070	5	5	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0010	4070	4	4	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0011	4070	3	0	1	0	0	2	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0012	4070	3	0	3	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0013	4070	3	3	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0014	4070	2	2	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0015	4070	2	0	0	2	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0016	4070	2	2	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0017	4070	2	0	2	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0018	4070	2	0	0	2	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0019	4070	2	2	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0020	4070	1	0	1	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0021	4070	1	1	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0022	4070	1	0	0	0	0	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0023	4070	1	0	0	1	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0024	4070	1	0	0	1	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0025	4070	1	0	0	0	0	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0026	4070	1	1	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0027	4070	1	0	0	0	0	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0028	4070	1	0	0	0	0	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0029	4070	1	1	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0030	4070	1	1	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0031	4070	1	1	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0032	4070	1	1	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0033	4070	1	1	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0034	4070	1	1	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0035	4070	1	1	0	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0036	4070	1	0	1	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846