JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	SAS	aseq	genename	chr	start	end
DNAH3_chr16_20928111_21155846	0/0	a0037	4070	1	0	0	0	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0038	4070	1	0	1	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0039	4070	1	1	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0040	4070	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0041	4070	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0042	4070	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0043	4070	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0044	4070	1	0	0	0	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0045	4070	1	0	1	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0046	4070	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0047	4070	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0048	4070	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0049	4070	1	1	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0050	4070	1	1	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0051	4070	1	1	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0052	4070	1	0	0	0	1	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0053	4070	1	0	1	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0054	4070	1	0	0	1	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0055	4070	1	1	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH3_chr16_20928111_21155846	0/0	a0056	4070	1	1	0	0	0	copy fasta	DNAH3	chr16	20928111	21155846
DNAH5_chr5_13685328_13949688	0/0	a0001	4624	9	3	4	0	2	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0002	4624	7	1	2	0	4	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0003	4624	6	0	1	4	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0004	4624	6	0	2	4	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0005	4624	5	0	1	4	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0006	4624	5	0	0	4	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0007	4624	5	2	1	1	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0008	4624	5	2	2	1	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0009	4624	5	0	5	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0010	4624	4	1	0	3	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0011	4624	4	4	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0012	4624	4	0	2	1	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0013	4624	4	1	2	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0014	4624	4	2	2	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0015	4624	4	0	1	2	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0016	4624	3	0	0	3	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0017	4624	3	0	0	3	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0018	4624	3	0	2	1	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0019	4624	3	0	1	2	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0020	4624	3	1	1	1	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0021	4624	3	0	1	2	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0022	4624	3	0	1	2	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0023	4624	3	1	0	2	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/1	a0024	4624	3	2	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0025	4624	3	2	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0026	4624	3	0	0	3	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0027	4624	3	2	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0028	4624	3	1	0	0	2	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0029	4624	2	0	0	2	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0030	4624	2	0	0	2	0	copy fasta	DNAH5	chr5	13685328	13949688