JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAH5_chr5_13685328_13949688	0/0	a0031	4624	2	0	0	2	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0032	4624	2	0	0	2	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0033	4624	2	2	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0034	4624	2	2	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0035	4624	2	2	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0036	4624	2	0	2	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0037	4624	2	0	1	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0038	4624	2	0	0	0	0	2	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0039	4624	2	2	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0040	4624	2	2	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0041	4624	2	0	1	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0042	4624	2	1	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0043	4624	2	0	2	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0044	4624	2	0	0	1	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0045	4624	2	0	2	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0046	4624	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0047	4624	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0048	4624	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	1/0	a0049	4624	1	0	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0050	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0051	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0052	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0053	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0054	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0055	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0056	4624	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0057	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0058	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0059	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0060	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0061	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0062	4624	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0063	4624	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0064	4624	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0065	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0066	4624	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0067	4624	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0068	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0069	4624	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0070	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0071	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0072	4624	1	0	0	0	1	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0073	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0074	4624	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0075	4624	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0076	4624	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0077	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0078	4624	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0079	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0080	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688