JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAH5_chr5_13685328_13949688	0/0	a0131	4624	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0132	4624	1	0	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0133	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0134	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0135	4624	1	0	1	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0136	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0137	4624	1	0	0	1	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0138	4624	1	0	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0139	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0140	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0141	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0142	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0143	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0144	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0145	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0146	4624	1	1	0	0	0	0	copy fasta	DNAH5	chr5	13685328	13949688
DNAH5_chr5_13685328_13949688	0/0	a0147	4624	1	0	0	0	0	1	copy fasta	DNAH5	chr5	13685328	13949688
DNAH6_chr2_84511498_84824589	0/1	a0001	4158	45	23	10	5	1	5	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0002	4158	11	3	4	3	0	1	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0003	4158	9	1	5	2	0	1	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0004	4158	8	0	5	0	2	1	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0005	4158	8	8	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0006	4158	5	4	1	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0007	4158	5	5	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0008	4158	3	3	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0009	4158	3	3	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0010	4157	2	1	1	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0011	4158	2	1	0	0	1	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0012	4158	2	2	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0013	4158	2	2	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0014	4158	2	0	0	0	0	2	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0015	4158	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0016	4158	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0017	4158	1	0	0	0	0	1	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0018	4158	1	0	0	0	0	1	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0019	4158	1	0	0	0	0	1	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0020	4158	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0021	4158	1	0	0	0	0	1	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	0/0	a0022	4158	1	1	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH6_chr2_84511498_84824589	1/0	a0023	4158	1	0	0	0	0	0	copy fasta	DNAH6	chr2	84511498	84824589
DNAH7_chr2_195732703_196073837	0/0	a0001	4024	73	7	15	42	4	5	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0002	4024	36	0	2	33	1	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0003	4024	15	3	2	9	0	1	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	1/0	a0004	4024	12	11	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0005	4024	10	10	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/1	a0006	4024	10	0	7	0	0	2	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0007	4024	9	9	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0008	4024	8	8	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0009	4024	8	2	3	0	2	1	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0010	4024	8	2	3	2	1	0	copy fasta	DNAH7	chr2	195732703	196073837