JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAH7_chr2_195732703_196073837	0/0	a0011	4024	5	0	2	3	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0012	4024	5	5	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0013	4024	4	3	1	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0014	4024	4	1	2	0	0	1	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0015	4024	4	0	1	3	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0016	4024	4	4	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0017	4024	3	3	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0018	4024	3	3	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0019	4024	2	0	0	2	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0020	4024	2	0	1	0	0	1	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0021	4024	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0022	120	1	0	1	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0023	4024	1	0	1	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0024	4024	1	0	0	1	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0025	4024	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0026	4024	1	0	0	1	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0027	4024	1	0	1	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0028	4024	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0029	4024	1	0	0	1	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0030	4024	1	0	0	1	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0031	4024	1	0	0	1	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0032	4024	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0033	4024	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0034	4024	1	0	1	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0035	4024	1	0	0	1	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0036	4024	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0037	4024	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0038	4024	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0039	4024	1	0	0	1	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0040	4024	1	0	0	1	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0041	4024	1	0	0	0	0	1	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0042	4024	1	0	1	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0043	4024	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0044	4024	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0045	4024	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0046	4024	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0047	4024	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0048	4024	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0049	4024	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0050	4024	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH7_chr2_195732703_196073837	0/0	a0051	4024	1	1	0	0	0	0	copy fasta	DNAH7	chr2	195732703	196073837
DNAH8_chr6_38710311_39035792	0/0	a0001	4707	42	16	10	7	1	8	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0002	4707	22	1	3	16	0	2	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0003	4707	18	3	13	1	0	1	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0004	4707	18	5	6	3	1	3	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0005	4707	14	0	0	12	0	2	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0006	4707	14	0	1	13	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0007	4707	12	0	2	7	0	3	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0008	4707	11	2	6	0	1	2	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0009	4707	11	0	1	9	0	1	copy fasta	DNAH8	chr6	38710311	39035792