Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADGRF3_chr2_26303175_26351789	0/0	a0028	1004	1	0	0	1	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0029	1004	1	0	0	1	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0030	1004	1	0	1	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0031	1004	1	0	1	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	a0032	1004	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF4_chr6_47693580_47727014	0/1	a0001	695	307	58	70	143	12	23	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	1/0	a0002	695	69	33	4	20	2	9	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	a0003	695	6	0	1	5	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	a0004	695	2	0	0	2	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	a0005	695	2	1	1	0	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	a0006	695	1	0	0	0	0	1	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	a0007	695	1	1	0	0	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	a0008	695	1	0	0	0	0	1	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	a0009	695	1	0	0	1	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	a0010	695	1	0	0	1	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	a0011	695	1	1	0	0	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	a0012	695	1	0	0	0	0	1	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	a0013	695	1	0	0	0	0	1	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF5_chr6_46847522_46926938	0/0	a0001	1346	167	13	41	82	9	22	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	a0002	1346	134	27	15	74	4	14	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	1/0	a0003	1346	52	39	8	1	1	2	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	a0004	1346	11	10	1	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/1	a0005	1346	2	0	0	0	0	1	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	a0006	1346	2	2	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	a0007	1346	1	0	0	0	0	1	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	a0008	1346	1	0	1	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	a0009	1346	1	0	0	0	0	1	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	a0010	1346	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	a0011	1346	1	0	0	1	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	a0012	1346	1	0	0	1	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	a0013	1346	1	0	1	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	a0014	1346	1	0	0	1	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	a0015	1346	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	a0016	1346	1	0	0	0	0	1	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	a0017	1346	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	a0018	1346	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	a0019	1346	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	a0020	1346	1	0	1	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRG1_chr16_57623630_57670567	0/0	a0001	687	312	83	36	164	5	24	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	1/1	a0002	687	99	8	32	31	9	17	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	a0003	687	25	6	11	1	2	5	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	a0004	687	4	0	3	0	0	1	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	a0005	687	1	1	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	a0006	687	1	1	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	a0007	687	1	0	0	1	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	a0008	687	1	0	0	0	1	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	a0009	687	1	1	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	a0010	687	1	0	0	0	0	1	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	a0011	687	1	0	0	0	1	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	a0012	687	1	0	0	1	0	0	copy fasta	ADGRG1	chr16	57623630	57670567