JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAH8_chr6_38710311_39035792	0/0	a0060	4707	1	0	1	0	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0061	4707	1	0	0	0	0	1	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0062	4707	1	1	0	0	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0063	4707	1	0	0	1	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0064	4707	1	0	1	0	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0065	4707	1	1	0	0	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0066	4707	1	1	0	0	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0067	4707	1	0	0	0	0	1	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0068	4707	1	1	0	0	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0069	4707	1	0	0	0	1	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0070	4707	1	1	0	0	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0071	4707	1	0	0	1	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0072	4707	1	0	0	1	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0073	1965	1	0	0	1	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0074	4707	1	0	0	0	0	1	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0075	4707	1	0	0	0	0	1	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0076	4707	1	0	1	0	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0077	4707	1	0	0	1	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0078	4707	1	0	0	1	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0079	4707	1	0	0	1	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0080	4707	1	1	0	0	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0081	4707	1	1	0	0	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH8_chr6_38710311_39035792	0/0	a0082	4707	1	1	0	0	0	0	copy fasta	DNAH8	chr6	38710311	39035792
DNAH9_chr17_11593470_11974748	0/0	a0001	4486	33	7	5	15	2	4	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/1	a0002	4486	15	4	2	6	1	1	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0003	4486	12	1	2	7	1	1	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0004	4486	11	4	2	3	0	2	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0005	4486	8	1	5	1	0	1	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0006	4486	5	1	0	3	0	1	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0007	4486	4	1	2	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0008	4486	3	3	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0009	4486	3	2	1	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0010	4486	3	0	1	2	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	1/0	a0011	4486	2	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0012	4486	2	0	0	1	1	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0013	4486	2	0	0	2	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0014	4486	2	1	0	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0015	4486	2	0	1	1	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0016	4486	2	2	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0017	4486	2	2	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0018	4486	2	2	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0019	4486	2	2	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0020	4486	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0021	4486	1	0	0	0	0	1	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0022	4486	1	0	0	0	0	1	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0023	4486	1	0	1	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0024	4486	1	0	0	0	0	1	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0025	4486	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0026	4486	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0027	4486	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748