JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAH9_chr17_11593470_11974748	0/0	a0078	4486	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0079	4486	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0080	4486	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0081	4486	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAH9_chr17_11593470_11974748	0/0	a0082	4486	1	1	0	0	0	0	copy fasta	DNAH9	chr17	11593470	11974748
DNAI1_chr9_34453805_34525984	1/1	a0001	699	267	45	53	132	9	26	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	a0002	699	41	20	12	4	2	3	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	a0003	699	33	4	6	23	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	a0004	699	14	0	0	10	1	3	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	a0005	699	10	0	5	1	3	1	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	a0006	699	8	8	0	0	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	a0007	699	3	2	1	0	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	a0008	699	1	0	1	0	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	a0009	699	1	1	0	0	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	a0010	699	1	0	0	0	1	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	a0011	699	1	0	0	1	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	a0012	699	1	0	0	1	0	0	copy fasta	DNAI1	chr9	34453805	34525984
DNAI1_chr9_34453805_34525984	0/0	a0013	699	1	0	0	0	0	1	copy fasta	DNAI1	chr9	34453805	34525984
DNAI2_chr17_74269234_74319884	0/1	a0001	605	267	30	54	135	12	35	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	a0002	605	72	48	7	10	0	7	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	1/0	a0003	605	28	4	2	18	0	3	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	a0004	605	8	8	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	a0005	605	7	0	0	7	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	a0006	605	4	3	1	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	a0007	605	2	0	0	2	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	a0008	605	2	2	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	a0009	605	1	1	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	a0010	605	1	0	0	1	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	a0011	605	1	0	0	1	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	a0012	605	1	1	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	a0013	605	1	1	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	a0014	605	1	1	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	a0015	605	1	1	0	0	0	0	copy fasta	DNAI2	chr17	74269234	74319884
DNAI2_chr17_74269234_74319884	0/0	a0016	605	1	0	0	0	0	1	copy fasta	DNAI2	chr17	74269234	74319884
DNAI3_chr1_85057327_85138138	1/1	a0001	891	251	61	41	109	11	27	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	a0002	891	87	29	17	37	3	1	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	a0003	891	27	0	7	19	1	0	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	a0004	891	5	0	0	4	0	1	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	a0005	891	1	0	0	1	0	0	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	a0006	891	1	0	0	0	0	1	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	a0007	891	1	0	0	0	1	0	copy fasta	DNAI3	chr1	85057327	85138138
DNAI3_chr1_85057327_85138138	0/0	a0008	891	1	0	1	0	0	0	copy fasta	DNAI3	chr1	85057327	85138138
DNAI4_chr1_66807885_66929856	0/0	a0001	848	113	29	23	44	7	10	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/1	a0002	848	100	29	17	30	4	19	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	a0003	848	22	8	4	6	2	2	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	1/0	a0004	848	20	3	6	6	1	3	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	a0005	848	2	2	0	0	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	a0006	848	2	2	0	0	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	a0007	848	2	2	0	0	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	a0008	848	1	0	0	1	0	0	copy fasta	DNAI4	chr1	66807885	66929856