JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAI4_chr1_66807885_66929856	0/0	a0009	848	1	1	0	0	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI4_chr1_66807885_66929856	0/0	a0010	848	1	0	0	1	0	0	copy fasta	DNAI4	chr1	66807885	66929856
DNAI7_chr12_25103289_25200160	0/1	a0001	722	224	65	46	73	7	32	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	a0002	722	89	12	25	39	5	8	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	a0003	722	11	10	1	0	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	a0004	722	3	3	0	0	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	1/0	a0005	722	2	0	1	0	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	a0006	722	1	0	0	0	0	1	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	a0007	722	1	0	1	0	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	a0008	722	1	1	0	0	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	a0009	722	1	1	0	0	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	a0010	722	1	0	0	0	0	1	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	a0011	722	1	0	1	0	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAI7_chr12_25103289_25200160	0/0	a0012	722	1	0	1	0	0	0	copy fasta	DNAI7	chr12	25103289	25200160
DNAJA1_chr9_33020273_33044907	1/1	a0001	397	444	90	82	214	14	42	copy fasta	DNAJA1	chr9	33020273	33044907
DNAJA2_chr16_46950362_46978674	1/1	a0001	412	279	78	56	103	12	28	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA2_chr16_46950362_46978674	0/0	a0002	412	1	0	0	1	0	0	copy fasta	DNAJA2	chr16	46950362	46978674
DNAJA3_chr16_4420868_4461775	0/0	a0001	480	212	66	45	76	6	19	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/1	a0002	480	131	28	27	49	10	16	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	a0003	480	1	0	0	1	0	0	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA3_chr16_4420868_4461775	0/0	a0004	480	1	0	0	0	0	1	copy fasta	DNAJA3	chr16	4420868	4461775
DNAJA4_chr15_78259562_78287191	1/1	a0001	397	434	93	72	205	16	46	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	a0002	397	2	0	2	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	a0003	397	2	0	0	0	0	2	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	a0004	397	1	0	0	1	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	a0005	397	1	1	0	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	a0006	397	1	1	0	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJA4_chr15_78259562_78287191	0/0	a0007	397	1	1	0	0	0	0	copy fasta	DNAJA4	chr15	78259562	78287191
DNAJB11_chr3_186565720_186590793	1/1	a0001	358	249	48	58	100	11	30	copy fasta	DNAJB11	chr3	186565720	186590793
DNAJB11_chr3_186565720_186590793	0/0	a0002	358	120	46	16	37	7	14	copy fasta	DNAJB11	chr3	186565720	186590793
DNAJB11_chr3_186565720_186590793	0/0	a0003	358	1	0	0	1	0	0	copy fasta	DNAJB11	chr3	186565720	186590793
DNAJB12_chr10_72327863_72359919	1/1	a0001	375	285	87	60	84	10	42	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	a0002	375	2	0	0	2	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	a0003	375	2	1	1	0	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	a0004	375	2	2	0	0	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB12_chr10_72327863_72359919	0/0	a0005	375	1	0	1	0	0	0	copy fasta	DNAJB12	chr10	72327863	72359919
DNAJB13_chr11_73946026_73975281	1/1	a0001	316	308	75	50	138	9	34	copy fasta	DNAJB13	chr11	73946026	73975281
DNAJB13_chr11_73946026_73975281	0/0	a0002	316	124	25	32	52	5	10	copy fasta	DNAJB13	chr11	73946026	73975281
DNAJB13_chr11_73946026_73975281	0/0	a0003	316	2	0	0	0	0	2	copy fasta	DNAJB13	chr11	73946026	73975281
DNAJB13_chr11_73946026_73975281	0/0	a0004	316	1	0	0	1	0	0	copy fasta	DNAJB13	chr11	73946026	73975281
DNAJB13_chr11_73946026_73975281	0/0	a0005	316	1	0	0	1	0	0	copy fasta	DNAJB13	chr11	73946026	73975281
DNAJB14_chr4_99891248_99951618	1/1	a0001	379	325	71	66	142	10	34	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	a0002	379	10	10	0	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB14_chr4_99891248_99951618	0/0	a0003	379	1	1	0	0	0	0	copy fasta	DNAJB14	chr4	99891248	99951618
DNAJB1_chr19_14509769_14523397	0/0	a0001	340	347	94	78	119	14	42	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	a0002	340	1	0	0	1	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	a0003	340	1	1	0	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB1_chr19_14509769_14523397	0/0	a0004	340	1	1	0	0	0	0	copy fasta	DNAJB1	chr19	14509769	14523397
DNAJB2_chr2_219274366_219291895	1/1	a0001	324	426	94	80	192	14	44	copy fasta	DNAJB2	chr2	219274366	219291895
DNAJB4_chr1_77999939_78022964	1/1	a0001	337	424	90	78	194	12	48	copy fasta	DNAJB4	chr1	77999939	78022964