JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAJB5_chr9_34984745_35003428	1/1	a0001	420	449	96	79	216	12	44	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB5_chr9_34984745_35003428	0/0	a0002	420	1	0	1	0	0	0	copy fasta	DNAJB5	chr9	34984745	35003428
DNAJB6_chr7_157332004_157422439	1/1	a0001	326	368	96	72	149	10	39	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	a0002	326	2	0	0	1	0	1	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	a0003	326	1	1	0	0	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB6_chr7_157332004_157422439	0/0	a0004	326	1	1	0	0	0	0	copy fasta	DNAJB6	chr7	157332004	157422439
DNAJB7_chr22_40854549_40867113	1/1	a0001	309	362	87	48	168	17	40	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	a0002	309	17	0	1	15	0	1	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	a0003	58	16	0	15	1	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	a0004	309	5	5	0	0	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	a0005	309	5	0	2	0	1	2	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	a0006	309	1	0	0	0	0	1	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	a0007	309	1	0	0	1	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	a0008	309	1	0	0	1	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	a0009	309	1	0	0	1	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB7_chr22_40854549_40867113	0/0	a0010	39	1	0	0	1	0	0	copy fasta	DNAJB7	chr22	40854549	40867113
DNAJB8_chr3_128457437_128471890	1/1	a0001	232	441	84	80	211	16	48	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	a0002	232	8	8	0	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	a0003	232	3	0	0	3	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	a0004	232	2	1	1	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	a0005	232	1	0	0	1	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	a0006	232	1	1	0	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	a0007	232	1	0	0	1	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB8_chr3_128457437_128471890	0/0	a0008	232	1	0	1	0	0	0	copy fasta	DNAJB8	chr3	128457437	128471890
DNAJB9_chr7_108564874_108579850	1/1	a0001	223	421	84	72	206	14	43	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	a0002	223	12	12	0	0	0	0	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJB9_chr7_108564874_108579850	0/0	a0003	223	1	0	0	0	0	1	copy fasta	DNAJB9	chr7	108564874	108579850
DNAJC10_chr2_182711257_182799464	1/0	a0001	793	102	11	20	60	3	7	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	a0002	793	96	49	12	32	0	3	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	a0003	793	88	7	20	46	5	10	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	a0004	793	19	1	0	16	0	2	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	a0005	793	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	a0006	793	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	a0007	793	1	1	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/0	a0008	793	1	0	0	1	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC10_chr2_182711257_182799464	0/1	a0009	793	1	0	0	0	0	0	copy fasta	DNAJC10	chr2	182711257	182799464
DNAJC11_chr1_6629170_6706816	1/1	a0001	559	299	81	36	135	7	38	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	a0002	559	48	14	27	0	4	3	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	a0003	559	17	1	10	0	3	3	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	a0004	559	1	0	1	0	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC11_chr1_6629170_6706816	0/0	a0005	559	1	0	0	1	0	0	copy fasta	DNAJC11	chr1	6629170	6706816
DNAJC12_chr10_67791669_67843188	1/1	a0001	198	370	80	56	178	14	40	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/0	a0002	198	11	9	2	0	0	0	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/0	a0003	198	1	0	0	1	0	0	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/0	a0004	198	1	0	0	1	0	0	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC12_chr10_67791669_67843188	0/0	a0005	198	1	1	0	0	0	0	copy fasta	DNAJC12	chr10	67791669	67843188
DNAJC13_chr3_132412502_132544032	0/1	a0001	2243	236	72	34	107	4	18	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	1/0	a0002	2243	52	1	25	14	2	9	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	a0003	2243	5	0	3	0	1	1	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	a0004	2243	4	4	0	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032