JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAJC13_chr3_132412502_132544032	0/0	a0005	2243	3	0	2	0	1	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	a0006	2243	3	0	2	1	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	a0007	2243	3	3	0	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	a0008	2243	2	0	2	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	a0009	2243	2	0	0	0	0	2	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	a0010	2243	1	0	0	1	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	a0011	2243	1	0	1	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	a0012	2243	1	1	0	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	a0013	2243	1	0	1	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	a0014	2243	1	1	0	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	a0015	2243	1	1	0	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	a0016	2243	1	1	0	0	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC13_chr3_132412502_132544032	0/0	a0017	2243	1	0	0	1	0	0	copy fasta	DNAJC13	chr3	132412502	132544032
DNAJC14_chr12_55815985_55834587	1/1	a0001	702	418	91	78	189	18	40	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	a0002	702	2	0	0	2	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	a0003	702	2	2	0	0	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	a0004	702	1	1	0	0	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	a0005	702	1	1	0	0	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	a0006	702	1	0	0	1	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC14_chr12_55815985_55834587	0/0	a0007	702	1	1	0	0	0	0	copy fasta	DNAJC14	chr12	55815985	55834587
DNAJC15_chr13_43018586_43119213	1/1	a0001	150	277	44	56	135	11	29	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	a0002	150	68	30	10	19	3	6	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	a0003	150	6	6	0	0	0	0	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC15_chr13_43018586_43119213	0/0	a0004	150	1	0	0	0	0	1	copy fasta	DNAJC15	chr13	43018586	43119213
DNAJC16_chr1_15521848_15576733	1/1	a0001	782	351	83	74	140	16	36	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	a0002	782	1	1	0	0	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	a0003	782	1	0	0	1	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	a0004	782	1	0	0	1	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	a0005	782	1	0	0	1	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC16_chr1_15521848_15576733	0/0	a0006	782	1	0	0	1	0	0	copy fasta	DNAJC16	chr1	15521848	15576733
DNAJC17_chr15_40760161_40812473	1/1	a0001	304	325	61	62	143	16	41	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	a0002	304	28	25	2	1	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	a0003	304	4	0	4	0	0	0	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC17_chr15_40760161_40812473	0/0	a0004	304	1	0	0	0	0	1	copy fasta	DNAJC17	chr15	40760161	40812473
DNAJC18_chr5_139405203_139444525	1/1	a0001	358	310	81	54	131	14	28	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	a0002	358	2	0	0	2	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	a0003	358	1	0	0	1	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC18_chr5_139405203_139444525	0/0	a0004	358	1	1	0	0	0	0	copy fasta	DNAJC18	chr5	139405203	139444525
DNAJC19_chr3_180978709_180994736	1/1	a0001	116	398	88	74	170	18	46	copy fasta	DNAJC19	chr3	180978709	180994736
DNAJC1_chr10_21751548_22008730	1/1	a0001	554	160	69	60	11	6	12	copy fasta	DNAJC1	chr10	21751548	22008730
DNAJC1_chr10_21751548_22008730	0/0	a0002	554	1	1	0	0	0	0	copy fasta	DNAJC1	chr10	21751548	22008730
DNAJC1_chr10_21751548_22008730	0/0	a0003	554	1	0	1	0	0	0	copy fasta	DNAJC1	chr10	21751548	22008730
DNAJC1_chr10_21751548_22008730	0/0	a0004	554	1	0	1	0	0	0	copy fasta	DNAJC1	chr10	21751548	22008730
DNAJC1_chr10_21751548_22008730	0/0	a0005	554	1	0	0	1	0	0	copy fasta	DNAJC1	chr10	21751548	22008730
DNAJC21_chr5_34924559_34963964	1/1	a0001	531	415	95	74	187	13	44	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	a0002	531	4	0	1	0	3	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	a0003	531	2	0	0	0	2	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	a0004	531	2	0	0	2	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	a0005	531	1	0	0	1	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	a0006	531	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964