JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAJC21_chr5_34924559_34963964	0/0	a0007	531	1	0	1	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	a0008	531	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC21_chr5_34924559_34963964	0/0	a0009	531	1	1	0	0	0	0	copy fasta	DNAJC21	chr5	34924559	34963964
DNAJC22_chr12_49341888_49358690	1/1	a0001	341	358	91	63	149	16	37	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	a0002	341	1	0	0	1	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	a0003	341	1	0	0	0	0	1	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	a0004	341	1	1	0	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC22_chr12_49341888_49358690	0/0	a0005	341	1	0	1	0	0	0	copy fasta	DNAJC22	chr12	49341888	49358690
DNAJC24_chr11_31364860_31437835	1/1	a0001	149	352	88	64	146	8	44	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC24_chr11_31364860_31437835	0/0	a0002	149	2	2	0	0	0	0	copy fasta	DNAJC24	chr11	31364860	31437835
DNAJC25_chr9_111626334_111659345	1/1	a0001	360	334	94	75	112	14	37	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	a0002	360	75	0	4	66	0	5	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	a0003	360	2	0	0	0	0	2	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC25_chr9_111626334_111659345	0/0	a0004	360	1	0	1	0	0	0	copy fasta	DNAJC25	chr9	111626334	111659345
DNAJC27_chr2_24938642_24976955	1/1	a0001	273	381	96	64	163	14	42	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC27_chr2_24938642_24976955	0/0	a0002	273	1	0	0	1	0	0	copy fasta	DNAJC27	chr2	24938642	24976955
DNAJC28_chr21_33483055_33496716	0/1	a0001	388	340	85	62	142	15	35	copy fasta	DNAJC28	chr21	33483055	33496716
DNAJC28_chr21_33483055_33496716	0/0	a0002	326	61	0	12	37	3	9	copy fasta	DNAJC28	chr21	33483055	33496716
DNAJC28_chr21_33483055_33496716	0/0	a0003	388	10	8	2	0	0	0	copy fasta	DNAJC28	chr21	33483055	33496716
DNAJC28_chr21_33483055_33496716	0/0	a0004	388	2	2	0	0	0	0	copy fasta	DNAJC28	chr21	33483055	33496716
DNAJC28_chr21_33483055_33496716	0/0	a0005	388	1	1	0	0	0	0	copy fasta	DNAJC28	chr21	33483055	33496716
DNAJC28_chr21_33483055_33496716	0/0	a0006	388	1	0	0	1	0	0	copy fasta	DNAJC28	chr21	33483055	33496716
DNAJC2_chr7_103307289_103349767	1/1	a0001	621	396	82	64	192	12	44	copy fasta	DNAJC2	chr7	103307289	103349767
DNAJC2_chr7_103307289_103349767	0/0	a0002	621	5	1	4	0	0	0	copy fasta	DNAJC2	chr7	103307289	103349767
DNAJC2_chr7_103307289_103349767	0/0	a0003	621	3	3	0	0	0	0	copy fasta	DNAJC2	chr7	103307289	103349767
DNAJC2_chr7_103307289_103349767	0/0	a0004	621	1	1	0	0	0	0	copy fasta	DNAJC2	chr7	103307289	103349767
DNAJC2_chr7_103307289_103349767	0/0	a0005	621	1	1	0	0	0	0	copy fasta	DNAJC2	chr7	103307289	103349767
DNAJC30_chr7_73675918_73688453	1/0	a0001	226	240	59	35	106	9	30	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/1	a0002	226	87	9	20	48	3	6	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	a0003	226	39	20	11	1	1	6	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	a0004	226	6	5	1	0	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	a0005	226	5	1	3	0	1	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	a0006	226	2	0	0	2	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC30_chr7_73675918_73688453	0/0	a0007	226	1	0	0	1	0	0	copy fasta	DNAJC30	chr7	73675918	73688453
DNAJC3_chr13_95672139_95799988	1/1	a0001	504	368	84	60	168	16	38	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	a0002	504	2	0	0	2	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	a0003	504	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	a0004	504	1	1	0	0	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	a0005	504	1	0	0	1	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC3_chr13_95672139_95799988	0/0	a0006	504	1	0	0	1	0	0	copy fasta	DNAJC3	chr13	95672139	95799988
DNAJC4_chr11_64225548_64239281	1/1	a0001	241	335	90	66	137	6	34	copy fasta	DNAJC4	chr11	64225548	64239281
DNAJC4_chr11_64225548_64239281	0/0	a0002	241	2	0	0	2	0	0	copy fasta	DNAJC4	chr11	64225548	64239281
DNAJC4_chr11_64225548_64239281	0/0	a0003	176	1	0	0	1	0	0	copy fasta	DNAJC4	chr11	64225548	64239281
DNAJC5B_chr8_66016553_66106245	1/1	a0001	199	250	84	56	69	12	27	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	a0002	199	1	0	0	0	0	1	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	a0003	195	1	1	0	0	0	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	a0004	199	1	0	0	1	0	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5B_chr8_66016553_66106245	0/0	a0005	199	1	1	0	0	0	0	copy fasta	DNAJC5B	chr8	66016553	66106245
DNAJC5G_chr2_27270433_27286499	1/1	a0001	189	320	72	71	123	16	36	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	a0002	189	17	14	3	0	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499