JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNAJC5G_chr2_27270433_27286499	0/0	a0003	189	2	0	0	2	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5G_chr2_27270433_27286499	0/0	a0004	189	1	0	0	1	0	0	copy fasta	DNAJC5G	chr2	27270433	27286499
DNAJC5_chr20_63890126_63941011	1/1	a0001	198	372	94	66	154	14	42	copy fasta	DNAJC5	chr20	63890126	63941011
DNAJC6_chr1_65304543_65420871	1/1	a0001	970	200	31	67	64	13	23	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	a0002	970	113	31	6	62	1	13	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	a0003	970	4	4	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	a0004	970	2	2	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	a0005	970	2	1	1	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	a0006	970	1	0	0	1	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	a0007	970	1	0	0	1	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	a0008	970	1	1	0	0	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	a0009	970	1	0	0	1	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC6_chr1_65304543_65420871	0/0	a0010	970	1	0	0	1	0	0	copy fasta	DNAJC6	chr1	65304543	65420871
DNAJC7_chr17_41971435_42022439	1/1	a0001	494	335	84	68	139	12	30	copy fasta	DNAJC7	chr17	41971435	42022439
DNAJC7_chr17_41971435_42022439	0/0	a0002	494	2	0	0	2	0	0	copy fasta	DNAJC7	chr17	41971435	42022439
DNAJC7_chr17_41971435_42022439	0/0	a0003	494	1	0	0	1	0	0	copy fasta	DNAJC7	chr17	41971435	42022439
DNAJC8_chr1_28195278_28238029	1/1	a0001	253	250	94	58	58	12	26	copy fasta	DNAJC8	chr1	28195278	28238029
DNAJC9_chr10_73236954_73252255	1/1	a0001	260	390	94	57	189	8	40	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	a0002	260	1	0	1	0	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	a0003	260	1	0	0	1	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	a0004	260	1	1	0	0	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	a0005	260	1	1	0	0	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	a0006	260	1	0	0	1	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAJC9_chr10_73236954_73252255	0/0	a0007	260	1	0	0	1	0	0	copy fasta	DNAJC9	chr10	73236954	73252255
DNAL1_chr14_73639986_73708732	1/1	a0001	190	339	90	67	128	14	38	copy fasta	DNAL1	chr14	73639986	73708732
DNAL1_chr14_73639986_73708732	0/0	a0002	190	1	0	1	0	0	0	copy fasta	DNAL1	chr14	73639986	73708732
DNAL4_chr22_38773508_38799143	1/1	a0001	105	370	90	68	150	14	46	copy fasta	DNAL4	chr22	38773508	38799143
DNALI1_chr1_37551940_37571857	1/0	a0001	258	307	77	55	128	12	34	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/1	a0002	258	92	9	17	51	6	8	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	a0003	258	3	0	3	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	a0004	258	1	0	1	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	a0005	258	1	0	0	1	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	a0006	258	1	1	0	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNALI1_chr1_37551940_37571857	0/0	a0007	258	1	1	0	0	0	0	copy fasta	DNALI1	chr1	37551940	37571857
DNASE1L1_chrX_154396236_154414254	1/1	a0001	302	273	73	59	101	10	28	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	a0002	302	3	0	0	0	1	2	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	a0003	202	1	0	0	1	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	a0004	302	1	1	0	0	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L1_chrX_154396236_154414254	0/0	a0005	45	1	0	0	1	0	0	copy fasta	DNASE1L1	chrX	154396236	154414254
DNASE1L2_chr16_2231444_2243711	1/1	a0001	299	411	100	72	174	16	47	copy fasta	DNASE1L2	chr16	2231444	2243711
DNASE1L2_chr16_2231444_2243711	0/0	a0002	299	1	0	0	1	0	0	copy fasta	DNASE1L2	chr16	2231444	2243711
DNASE1L2_chr16_2231444_2243711	0/0	a0003	299	1	0	0	0	0	1	copy fasta	DNASE1L2	chr16	2231444	2243711
DNASE1L2_chr16_2231444_2243711	0/0	a0004	299	1	0	0	1	0	0	copy fasta	DNASE1L2	chr16	2231444	2243711
DNASE1L3_chr3_58187257_58215972	1/1	a0001	305	357	97	71	136	14	37	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	a0002	305	10	0	5	5	0	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	a0003	305	2	0	2	0	0	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	a0004	305	1	0	0	0	0	1	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	a0005	305	1	0	0	1	0	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1L3_chr3_58187257_58215972	0/0	a0006	305	1	1	0	0	0	0	copy fasta	DNASE1L3	chr3	58187257	58215972
DNASE1_chr16_3649691_3663095	1/1	a0001	282	206	15	48	102	10	29	copy fasta	DNASE1	chr16	3649691	3663095