JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNASE1_chr16_3649691_3663095	0/0	a0002	282	202	63	24	98	3	14	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	a0003	282	9	6	2	0	1	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	a0004	282	6	6	0	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	a0005	282	4	0	0	4	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	a0006	282	2	2	0	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	a0007	282	1	0	0	1	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	a0008	282	1	1	0	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	a0009	282	1	0	0	0	0	1	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	a0010	282	1	0	0	1	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	a0011	89	1	0	0	1	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	a0012	282	1	0	1	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	a0013	282	1	0	0	0	0	1	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	a0014	282	1	0	1	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	a0015	282	1	0	0	1	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	a0016	282	1	0	0	0	0	1	copy fasta	DNASE1	chr16	3649691	3663095
DNASE1_chr16_3649691_3663095	0/0	a0017	282	1	1	0	0	0	0	copy fasta	DNASE1	chr16	3649691	3663095
DNASE2B_chr1_84393484_84420018	1/1	a0001	361	285	68	54	126	7	28	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	a0002	361	101	5	17	63	3	13	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	a0003	361	19	4	8	5	1	1	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	a0004	361	13	12	1	0	0	0	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	a0005	361	4	4	0	0	0	0	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	a0006	361	2	0	0	0	1	1	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	a0007	361	1	0	0	0	0	1	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2B_chr1_84393484_84420018	0/0	a0008	361	1	1	0	0	0	0	copy fasta	DNASE2B	chr1	84393484	84420018
DNASE2_chr19_12870209_12886449	1/1	a0001	360	366	92	69	151	18	34	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	a0002	360	2	1	1	0	0	0	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	a0003	360	1	0	0	1	0	0	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	a0004	360	1	0	0	0	0	1	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	a0005	360	1	0	0	0	0	1	copy fasta	DNASE2	chr19	12870209	12886449
DNASE2_chr19_12870209_12886449	0/0	a0006	360	1	1	0	0	0	0	copy fasta	DNASE2	chr19	12870209	12886449
DND1_chr5_140665794_140678576	1/1	a0001	353	372	90	62	168	16	34	copy fasta	DND1	chr5	140665794	140678576
DND1_chr5_140665794_140678576	0/0	a0002	353	4	4	0	0	0	0	copy fasta	DND1	chr5	140665794	140678576
DND1_chr5_140665794_140678576	0/0	a0003	353	2	0	2	0	0	0	copy fasta	DND1	chr5	140665794	140678576
DNER_chr2_229352629_229719555	1/1	a0001	737	158	55	29	41	8	23	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	a0002	733	7	6	1	0	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	a0003	737	3	3	0	0	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	a0004	737	2	0	1	0	0	1	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	a0005	737	1	1	0	0	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	a0006	737	1	0	0	1	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	a0007	737	1	0	0	1	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	a0008	737	1	0	0	1	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	a0009	737	1	1	0	0	0	0	copy fasta	DNER	chr2	229352629	229719555
DNER_chr2_229352629_229719555	0/0	a0010	737	1	0	1	0	0	0	copy fasta	DNER	chr2	229352629	229719555
DNHD1_chr11_6492280_6577020	0/0	a0001	4757	75	2	20	44	4	5	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0002	4757	20	1	2	12	3	2	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0003	4757	14	2	4	5	0	3	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0004	4757	10	5	3	2	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0005	4757	9	0	3	4	0	2	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0006	4757	8	2	1	5	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0007	4757	8	0	2	1	2	3	copy fasta	DNHD1	chr11	6492280	6577020