JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNHD1_chr11_6492280_6577020	0/0	a0008	4757	8	1	5	1	1	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0009	4757	8	7	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0010	4757	8	7	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0011	4757	7	0	5	2	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0012	4757	7	7	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0013	4757	5	0	1	4	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0014	4757	4	1	0	1	0	2	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0015	4757	4	1	0	0	0	3	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/1	a0016	4757	4	1	1	0	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0017	4757	4	4	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0018	4757	4	0	0	0	0	4	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0019	4757	3	1	0	0	2	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0020	4757	3	0	3	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0021	4757	3	3	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0022	4757	3	2	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0023	4757	3	0	3	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0024	4757	3	0	0	2	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0025	4757	3	0	0	3	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0026	4757	3	0	0	2	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0027	4757	3	0	0	3	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0028	4757	3	0	0	3	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0029	4757	2	2	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0030	4757	2	0	1	0	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0031	4757	2	0	0	0	2	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0032	4757	2	0	2	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0033	4757	2	2	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0034	4757	2	2	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0035	4757	2	2	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0036	4757	2	1	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0037	4757	2	1	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0038	4757	2	0	0	0	0	2	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0039	4757	2	0	2	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0040	4757	2	2	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0041	4757	2	2	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0042	4757	2	0	2	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0043	4757	2	0	0	0	0	2	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0044	4757	2	0	0	0	0	2	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0045	4757	2	0	0	0	0	2	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0046	3324	2	1	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0047	4757	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0048	4757	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0049	4757	1	0	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0050	4757	1	0	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0051	4757	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0052	4757	1	0	0	0	1	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0053	4757	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0054	4757	1	0	0	0	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0055	4757	1	0	1	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0056	3324	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0057	4757	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020