Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADGRG2_chrX_18984307_19127468	1/1	a0001	1017	167	44	26	72	5	18	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	a0002	1017	9	8	1	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	a0003	1017	5	5	0	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	a0004	1017	2	2	0	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	a0005	1017	2	0	0	2	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	a0006	1017	1	0	0	1	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	a0007	1017	1	1	0	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG2_chrX_18984307_19127468	0/0	a0008	1017	1	1	0	0	0	0	copy fasta	ADGRG2	chrX	18984307	19127468
ADGRG3_chr16_57663306_57694378	1/1	a0001	549	381	84	70	167	12	46	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	a0002	549	51	5	6	32	6	2	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	a0003	549	7	6	1	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	a0004	549	2	1	1	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	a0005	549	1	1	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	a0006	549	1	1	0	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	a0007	549	1	0	0	1	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	a0008	549	1	0	1	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	a0009	549	1	0	0	1	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	a0010	549	1	0	0	1	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG3_chr16_57663306_57694378	0/0	a0011	549	1	0	1	0	0	0	copy fasta	ADGRG3	chr16	57663306	57694378
ADGRG4_chrX_136295963_136421890	0/0	a0001	3079	81	24	17	27	4	9	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0002	3079	58	1	7	40	2	8	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	1/1	a0003	3080	40	13	10	9	1	5	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0004	3079	8	2	1	4	0	1	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0005	3079	6	5	1	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0006	3079	5	0	0	5	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0007	3079	3	0	0	3	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0008	3080	2	0	2	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0009	3079	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0010	3079	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0011	3079	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0012	3079	1	0	1	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0013	3079	1	0	0	0	0	1	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0014	3079	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0015	3079	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0016	3080	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0017	3080	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0018	3079	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0019	2703	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0020	3079	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0021	3079	1	0	1	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0022	3080	1	0	0	0	0	1	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0023	3080	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0024	3079	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0025	3079	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0026	3079	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0027	3079	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0028	3080	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0029	2575	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0030	3079	1	0	0	0	0	1	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0031	3079	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890