JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNHD1_chr11_6492280_6577020	0/0	a0108	4757	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0109	4757	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0110	4757	1	0	0	0	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0111	4757	1	1	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0112	4757	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0113	4757	1	0	0	1	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	1/0	a0114	4753	1	0	0	0	0	0	copy fasta	DNHD1	chr11	6492280	6577020
DNHD1_chr11_6492280_6577020	0/0	a0115	4757	1	0	0	0	0	1	copy fasta	DNHD1	chr11	6492280	6577020
DNLZ_chr9_136354483_136368744	1/0	a0001	178	337	80	71	133	10	42	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	a0002	178	37	7	0	25	1	4	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/1	a0003	178	29	1	3	22	2	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	a0004	189	7	3	3	0	0	1	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	a0005	178	2	2	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	a0006	189	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	a0007	189	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	a0008	178	1	1	0	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	a0009	178	1	0	1	0	0	0	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	a0010	178	1	0	0	0	0	1	copy fasta	DNLZ	chr9	136354483	136368744
DNLZ_chr9_136354483_136368744	0/0	a0011	178	1	0	0	0	1	0	copy fasta	DNLZ	chr9	136354483	136368744
DNM1L_chr12_32674301_32750650	1/1	a0001	736	230	90	56	42	8	32	copy fasta	DNM1L	chr12	32674301	32750650
DNM1_chr9_128198379_128260244	1/1	a0001	864	326	92	56	119	16	41	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	a0002	864	19	0	0	18	0	1	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	a0003	864	2	0	0	2	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	a0004	864	1	0	0	1	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	a0005	864	1	0	0	1	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM1_chr9_128198379_128260244	0/0	a0006	864	1	0	0	1	0	0	copy fasta	DNM1	chr9	128198379	128260244
DNM2_chr19_10713079_10836903	1/1	a0001	870	276	59	56	114	9	36	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	a0002	870	1	1	0	0	0	0	copy fasta	DNM2	chr19	10713079	10836903
DNM2_chr19_10713079_10836903	0/0	a0003	694	1	0	0	0	1	0	copy fasta	DNM2	chr19	10713079	10836903
DNM3_chr1_171836498_172417717	1/1	a0001	863	135	56	20	28	8	21	copy fasta	DNM3	chr1	171836498	172417717
DNM3_chr1_171836498_172417717	0/0	a0002	863	1	0	0	0	0	1	copy fasta	DNM3	chr1	171836498	172417717
DNMBP_chr10_99870577_100014947	1/0	a0001	1577	157	51	36	48	6	15	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/1	a0002	1577	81	17	23	28	5	7	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	a0003	1577	18	5	5	7	0	1	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	a0004	1577	3	3	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	a0005	1577	2	0	0	0	0	2	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	a0006	1577	2	2	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	a0007	1577	2	2	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	a0008	1577	1	0	0	1	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	a0009	1577	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	a0010	1577	1	0	0	0	0	1	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	a0011	1577	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	a0012	1577	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	a0013	1577	1	0	0	0	1	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	a0014	1577	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	a0015	1577	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMBP_chr10_99870577_100014947	0/0	a0016	1577	1	1	0	0	0	0	copy fasta	DNMBP	chr10	99870577	100014947
DNMT1_chr19_10128346_10199953	1/1	a0001	1632	279	68	59	111	12	27	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	a0002	1632	62	18	9	23	0	12	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	a0003	1632	25	0	2	23	0	0	copy fasta	DNMT1	chr19	10128346	10199953