JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNMT1_chr19_10128346_10199953	0/0	a0004	1632	8	0	0	8	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	a0005	1632	2	0	0	2	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	a0006	1632	1	1	0	0	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	a0007	1632	1	1	0	0	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	a0008	1632	1	0	0	1	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	a0009	1632	1	0	0	1	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	a0010	1632	1	1	0	0	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	a0011	1632	1	0	0	1	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	a0012	1632	1	0	0	1	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	a0013	1632	1	0	0	0	0	1	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	a0014	1632	1	1	0	0	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT1_chr19_10128346_10199953	0/0	a0015	1632	1	0	0	1	0	0	copy fasta	DNMT1	chr19	10128346	10199953
DNMT3A_chr2_25222874_25346925	1/1	a0001	912	294	68	62	118	12	32	copy fasta	DNMT3A	chr2	25222874	25346925
DNMT3B_chr20_32757385_32814356	1/1	a0001	853	288	90	59	89	10	38	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	a0002	853	5	0	0	0	0	5	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	a0003	853	1	0	0	1	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	a0004	853	1	0	0	0	0	1	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	a0005	853	1	0	1	0	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	a0006	853	1	0	0	1	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3B_chr20_32757385_32814356	0/0	a0007	853	1	0	0	1	0	0	copy fasta	DNMT3B	chr20	32757385	32814356
DNMT3L_chr21_44241339_44266897	1/1	a0001	386	330	68	63	153	8	36	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	a0002	386	56	22	13	11	4	6	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	a0003	386	2	0	2	0	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	a0004	386	1	1	0	0	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	a0005	386	1	0	0	1	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	a0006	386	1	1	0	0	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNMT3L_chr21_44241339_44266897	0/0	a0007	386	1	0	0	1	0	0	copy fasta	DNMT3L	chr21	44241339	44266897
DNPEP_chr2_219367043_219392912	1/1	a0001	485	355	82	72	154	11	34	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	a0002	485	8	8	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	a0003	485	2	2	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	a0004	485	1	0	0	0	1	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	a0005	485	1	0	0	0	0	1	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	a0006	485	1	1	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	a0007	485	1	1	0	0	0	0	copy fasta	DNPEP	chr2	219367043	219392912
DNPEP_chr2_219367043_219392912	0/0	a0008	485	1	0	0	0	0	1	copy fasta	DNPEP	chr2	219367043	219392912
DNPH1_chr6_43220629_43234481	1/1	a0001	174	415	98	78	181	16	40	copy fasta	DNPH1	chr6	43220629	43234481
DNPH1_chr6_43220629_43234481	0/0	a0002	174	2	0	0	2	0	0	copy fasta	DNPH1	chr6	43220629	43234481
DNPH1_chr6_43220629_43234481	0/0	a0003	174	1	0	0	1	0	0	copy fasta	DNPH1	chr6	43220629	43234481
DNTTIP1_chr20_45786954_45816418	1/1	a0001	329	374	94	67	155	16	40	copy fasta	DNTTIP1	chr20	45786954	45816418
DNTTIP1_chr20_45786954_45816418	0/0	a0002	329	36	0	2	34	0	0	copy fasta	DNTTIP1	chr20	45786954	45816418
DNTTIP1_chr20_45786954_45816418	0/0	a0003	329	1	0	0	1	0	0	copy fasta	DNTTIP1	chr20	45786954	45816418
DNTTIP1_chr20_45786954_45816418	0/0	a0004	329	1	0	1	0	0	0	copy fasta	DNTTIP1	chr20	45786954	45816418
DNTTIP2_chr1_93861284_93884206	1/1	a0001	756	216	59	51	78	6	20	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	a0002	756	121	10	17	69	7	18	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	a0003	756	22	21	1	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	a0004	756	5	0	0	5	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	a0005	756	2	0	1	0	1	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	a0006	756	2	2	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	a0007	756	2	2	0	0	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	a0008	756	1	0	0	0	0	1	copy fasta	DNTTIP2	chr1	93861284	93884206