JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DNTTIP2_chr1_93861284_93884206	0/0	a0009	756	1	0	0	1	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	a0010	756	1	0	0	0	0	1	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTTIP2_chr1_93861284_93884206	0/0	a0011	756	1	0	0	1	0	0	copy fasta	DNTTIP2	chr1	93861284	93884206
DNTT_chr10_96299434_96343564	0/1	a0001	509	317	82	45	142	8	39	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	a0002	509	4	3	1	0	0	0	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	1/0	a0003	509	2	1	0	0	0	0	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	a0004	509	1	0	0	1	0	0	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	a0005	509	1	0	0	0	0	1	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	a0006	509	1	1	0	0	0	0	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	a0007	509	1	1	0	0	0	0	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	a0008	509	1	0	0	1	0	0	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	a0009	509	1	0	0	1	0	0	copy fasta	DNTT	chr10	96299434	96343564
DNTT_chr10_96299434_96343564	0/0	a0010	509	1	0	0	1	0	0	copy fasta	DNTT	chr10	96299434	96343564
DOC2A_chr16_30000514_30016027	1/0	a0001	400	213	62	41	78	11	20	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	a0002	400	109	17	12	63	5	12	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	a0003	400	1	0	0	1	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	a0004	400	1	1	0	0	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	a0005	400	1	0	1	0	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	a0006	400	1	0	1	0	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/1	a0007	400	1	0	0	0	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2A_chr16_30000514_30016027	0/0	a0008	400	1	0	1	0	0	0	copy fasta	DOC2A	chr16	30000514	30016027
DOC2B_chr17_137789_186650	0/1	a0001	412	334	80	69	132	16	36	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	a0002	412	4	4	0	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOC2B_chr17_137789_186650	0/0	a0003	412	1	0	1	0	0	0	copy fasta	DOC2B	chr17	137789	186650
DOCK10_chr2_224760090_225047468	1/1	a0001	2186	88	11	28	28	5	14	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	a0002	2186	60	48	3	4	3	2	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	a0003	2186	5	5	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	a0004	2186	3	0	1	2	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	a0005	2186	2	2	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	a0006	2186	2	2	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	a0007	2186	2	2	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	a0008	2186	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	a0009	2186	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	a0010	2186	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	a0011	2186	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	a0012	2186	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	a0013	2186	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	a0014	2186	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	a0015	2186	1	1	0	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	a0016	2193	1	0	1	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK10_chr2_224760090_225047468	0/0	a0017	2186	1	0	1	0	0	0	copy fasta	DOCK10	chr2	224760090	225047468
DOCK11_chrX_118490815_118691147	1/1	a0001	2073	199	55	39	77	4	22	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	a0002	2073	4	2	0	0	2	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	a0003	2073	2	2	0	0	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	a0004	2073	1	0	0	0	0	1	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	a0005	2073	1	0	0	0	1	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	a0006	2073	1	1	0	0	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	a0007	2073	1	0	0	1	0	0	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	a0008	2073	1	0	0	0	0	1	copy fasta	DOCK11	chrX	118490815	118691147
DOCK11_chrX_118490815_118691147	0/0	a0009	92	1	0	0	1	0	0	copy fasta	DOCK11	chrX	118490815	118691147