JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DOCK1_chr10_126900428_127457516	0/1	a0001	1886	83	34	21	15	0	12	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	a0002	1886	21	6	6	3	0	6	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	1/0	a0003	1886	18	15	2	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	a0004	1886	8	8	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	a0005	1886	3	1	1	1	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	a0006	1886	1	1	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	a0007	1886	1	0	0	1	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK1_chr10_126900428_127457516	0/0	a0008	1886	1	1	0	0	0	0	copy fasta	DOCK1	chr10	126900428	127457516
DOCK2_chr5_169632275_170088382	1/1	a0001	1830	166	49	30	53	8	24	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	a0002	1830	3	3	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	a0003	1830	2	2	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	a0004	1830	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	a0005	1830	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	a0006	1830	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	a0007	1830	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	a0008	1830	1	0	0	1	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	a0009	1830	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	a0010	1830	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	a0011	1830	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	a0012	1830	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	a0013	1830	1	0	0	0	0	1	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	a0014	1830	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	a0015	1830	1	1	0	0	0	0	copy fasta	DOCK2	chr5	169632275	170088382
DOCK2_chr5_169632275_170088382	0/0	a0016	1830	1	0	0	0	0	1	copy fasta	DOCK2	chr5	169632275	170088382
DOCK3_chr3_50669927_51389198	1/1	a0001	2030	208	47	38	106	6	9	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	a0002	2030	1	0	0	0	0	1	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	a0003	2030	1	1	0	0	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	a0004	2030	1	0	0	1	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK3_chr3_50669927_51389198	0/0	a0005	2030	1	0	0	1	0	0	copy fasta	DOCK3	chr3	50669927	51389198
DOCK4_chr7_111721110_112211399	0/0	a0001	1975	96	59	15	16	1	5	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	a0002	1975	3	0	1	2	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	a0003	1975	3	3	0	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	a0004	1975	1	0	0	0	0	1	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	a0005	1975	1	0	1	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	a0006	1975	1	0	0	0	1	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK4_chr7_111721110_112211399	0/0	a0007	1975	1	0	1	0	0	0	copy fasta	DOCK4	chr7	111721110	112211399
DOCK5_chr8_25179689_25420711	0/1	a0001	1870	139	62	24	36	2	14	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	a0002	1870	42	4	16	14	2	6	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	a0003	1870	9	6	3	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	a0004	1870	2	2	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	a0005	1870	2	0	0	2	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	a0006	1870	2	2	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	a0007	1870	2	0	0	0	0	2	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	a0008	1870	2	0	0	0	0	2	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	a0009	1870	1	0	1	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	1/0	a0010	1870	1	0	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	a0011	1870	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	a0012	1870	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	a0013	1870	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	a0014	1870	1	0	0	1	0	0	copy fasta	DOCK5	chr8	25179689	25420711