JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DOCK5_chr8_25179689_25420711	0/0	a0015	1870	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	a0016	1870	1	0	0	0	0	1	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	a0017	1870	1	0	0	0	0	1	copy fasta	DOCK5	chr8	25179689	25420711
DOCK5_chr8_25179689_25420711	0/0	a0018	1870	1	1	0	0	0	0	copy fasta	DOCK5	chr8	25179689	25420711
DOCK6_chr19_11194295_11267524	1/1	a0001	2047	126	63	13	39	3	6	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0002	2047	107	12	22	49	9	15	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0003	2047	16	0	5	7	2	2	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0004	2047	14	2	0	11	0	1	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0005	2047	11	0	7	0	0	4	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0006	2047	5	0	3	2	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0007	2047	3	3	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0008	2047	2	2	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0009	2047	2	0	2	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0010	2047	2	2	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0011	2047	2	0	2	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0012	2047	2	2	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0013	2047	1	1	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0014	2047	1	0	0	0	0	1	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0015	2047	1	0	1	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0016	2047	1	0	0	1	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0017	2047	1	1	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0018	2047	1	0	1	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0019	2047	1	0	0	1	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0020	2047	1	0	0	1	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0021	2047	1	0	1	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0022	2047	1	0	0	1	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0023	2047	1	0	1	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0024	2047	1	1	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0025	2047	1	1	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0026	2047	1	1	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0027	2047	1	0	0	1	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0028	2047	1	0	0	0	0	1	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0029	2047	1	1	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0030	2047	1	0	0	0	0	1	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0031	2047	1	1	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0032	2047	1	0	0	1	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0033	2047	1	0	0	0	0	1	copy fasta	DOCK6	chr19	11194295	11267524
DOCK6_chr19_11194295_11267524	0/0	a0034	2047	1	1	0	0	0	0	copy fasta	DOCK6	chr19	11194295	11267524
DOCK7_chr1_62449726_62693386	1/1	a0001	2140	206	61	39	66	12	26	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	a0002	2140	14	4	0	10	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	a0003	2140	3	2	1	0	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	a0004	2140	1	0	0	1	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	a0005	2140	1	0	0	1	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	a0006	2140	1	0	0	1	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	a0007	2140	1	1	0	0	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK7_chr1_62449726_62693386	0/0	a0008	2140	1	0	0	1	0	0	copy fasta	DOCK7	chr1	62449726	62693386
DOCK8_chr9_209865_470255	0/0	a0001	2099	51	12	13	18	0	8	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	1/0	a0002	2099	49	15	12	19	1	1	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	a0003	2099	33	2	5	20	2	4	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/1	a0004	2099	9	3	2	0	1	2	copy fasta	DOCK8	chr9	209865	470255