JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DOCK8_chr9_209865_470255	0/0	a0055	2099	1	0	0	0	0	1	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	a0056	2099	1	0	0	0	0	1	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	a0057	2099	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	a0058	2099	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	a0059	2099	1	0	0	1	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	a0060	2099	1	0	1	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK8_chr9_209865_470255	0/0	a0061	12	1	1	0	0	0	0	copy fasta	DOCK8	chr9	209865	470255
DOCK9_chr13_98788429_98983064	1/0	a0001	2092	336	87	52	147	13	36	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/1	a0002	2092	7	0	3	0	1	2	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	a0003	2092	1	0	1	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	a0004	2092	1	0	0	1	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	a0005	2092	1	0	0	1	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	a0006	2092	1	0	0	1	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOCK9_chr13_98788429_98983064	0/0	a0007	2092	1	1	0	0	0	0	copy fasta	DOCK9	chr13	98788429	98983064
DOHH_chr19_3485824_3505674	1/1	a0001	302	389	93	76	162	12	44	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	a0002	302	1	1	0	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	a0003	302	1	1	0	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOHH_chr19_3485824_3505674	0/0	a0004	302	1	1	0	0	0	0	copy fasta	DOHH	chr19	3485824	3505674
DOK1_chr2_74549720_74562551	1/1	a0001	481	327	92	58	149	4	22	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	a0002	481	1	1	0	0	0	0	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	a0003	481	1	0	1	0	0	0	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	a0004	481	1	0	0	0	0	1	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	a0005	481	1	0	0	0	0	1	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	a0006	176	1	0	1	0	0	0	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	a0007	481	1	0	0	1	0	0	copy fasta	DOK1	chr2	74549720	74562551
DOK1_chr2_74549720_74562551	0/0	a0008	481	1	1	0	0	0	0	copy fasta	DOK1	chr2	74549720	74562551
DOK2_chr8_21903873_21918690	1/1	a0001	412	411	86	69	199	12	43	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	a0002	412	10	1	5	4	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	a0003	412	8	0	4	0	4	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	a0004	412	3	0	0	0	0	3	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	a0005	412	3	3	0	0	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	a0006	412	1	0	0	1	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	a0007	412	1	0	0	1	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	a0008	412	1	0	1	0	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	a0009	412	1	1	0	0	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	a0010	412	1	0	0	1	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	a0011	412	1	1	0	0	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK2_chr8_21903873_21918690	0/0	a0012	412	1	0	1	0	0	0	copy fasta	DOK2	chr8	21903873	21918690
DOK3_chr5_177496904_177514826	1/1	a0001	440	413	90	68	197	17	39	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	a0002	440	18	3	10	3	1	1	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	a0003	440	2	2	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	a0004	440	1	0	0	1	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	a0005	440	1	0	0	1	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK3_chr5_177496904_177514826	0/0	a0006	440	1	1	0	0	0	0	copy fasta	DOK3	chr5	177496904	177514826
DOK4_chr16_57466922_57491493	1/1	a0001	326	398	92	66	179	14	45	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	a0002	326	6	0	0	6	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	a0003	326	4	4	0	0	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	a0004	326	1	0	0	1	0	0	copy fasta	DOK4	chr16	57466922	57491493
DOK4_chr16_57466922_57491493	0/0	a0005	326	1	0	0	0	0	1	copy fasta	DOK4	chr16	57466922	57491493
DOK5_chr20_54470593_54656169	1/1	a0001	306	130	82	36	6	0	4	copy fasta	DOK5	chr20	54470593	54656169