JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DOK6_chr18_69395888_69854087	1/1	a0001	331	167	65	36	32	4	28	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	a0002	331	2	0	0	2	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK6_chr18_69395888_69854087	0/0	a0003	331	1	1	0	0	0	0	copy fasta	DOK6	chr18	69395888	69854087
DOK7_chr4_3458306_3499482	1/0	a0001	504	183	42	51	54	10	25	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/1	a0002	504	102	4	8	76	3	10	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0003	504	54	11	16	14	2	11	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0004	504	21	9	7	2	1	2	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0005	504	11	11	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0006	504	7	7	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0007	504	3	2	1	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0008	504	3	3	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0009	504	3	0	0	3	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0010	504	2	2	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0011	504	2	2	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0012	504	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0013	504	1	1	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0014	504	1	1	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0015	504	1	0	0	0	0	1	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0016	504	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0017	504	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0018	504	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0019	504	1	1	0	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0020	504	1	0	1	0	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0021	504	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0022	504	1	0	0	0	0	1	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0023	504	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOK7_chr4_3458306_3499482	0/0	a0024	504	1	0	0	1	0	0	copy fasta	DOK7	chr4	3458306	3499482
DOLK_chr9_128940530_128952603	1/1	a0001	538	347	81	70	142	13	39	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	a0002	538	1	1	0	0	0	0	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	a0003	538	1	0	0	0	0	1	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	a0004	538	1	1	0	0	0	0	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	a0005	538	1	1	0	0	0	0	copy fasta	DOLK	chr9	128940530	128952603
DOLK_chr9_128940530_128952603	0/0	a0006	538	1	0	0	0	1	0	copy fasta	DOLK	chr9	128940530	128952603
DOLPP1_chr9_129076111_129095438	1/1	a0001	238	413	96	72	181	14	48	copy fasta	DOLPP1	chr9	129076111	129095438
DOLPP1_chr9_129076111_129095438	0/0	a0002	238	1	0	0	1	0	0	copy fasta	DOLPP1	chr9	129076111	129095438
DONSON_chr21_33572551_33593684	1/1	a0001	566	415	88	71	196	14	44	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	a0002	566	3	0	2	0	1	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	a0003	566	2	0	0	2	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	a0004	566	2	0	0	2	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	a0005	566	1	0	0	0	1	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	a0006	566	1	0	1	0	0	0	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	a0007	566	1	0	0	0	0	1	copy fasta	DONSON	chr21	33572551	33593684
DONSON_chr21_33572551_33593684	0/0	a0008	566	1	0	0	0	0	1	copy fasta	DONSON	chr21	33572551	33593684
DOP1A_chr6_83062671_83173471	1/0	a0001	2465	187	55	27	75	7	22	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	a0002	2465	57	0	11	38	3	5	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	a0003	2465	31	8	1	17	0	5	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/1	a0004	2465	7	1	4	1	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	a0005	2464	4	4	0	0	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	a0006	2465	4	4	0	0	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	a0007	2465	1	0	0	1	0	0	copy fasta	DOP1A	chr6	83062671	83173471