JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DOP1A_chr6_83062671_83173471	0/0	a0008	2465	1	1	0	0	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	a0009	2465	1	0	0	1	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	a0010	1523	1	1	0	0	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	a0011	2465	1	0	0	1	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	a0012	2465	1	0	0	1	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	a0013	2465	1	0	1	0	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1A_chr6_83062671_83173471	0/0	a0014	2465	1	0	0	1	0	0	copy fasta	DOP1A	chr6	83062671	83173471
DOP1B_chr21_36151824_36299274	0/0	a0001	2298	202	74	42	55	6	25	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/1	a0002	2298	27	1	4	10	2	9	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0003	2298	12	1	1	9	0	1	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	1/0	a0004	2298	11	0	7	0	3	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0005	2298	9	4	3	1	0	1	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0006	2298	5	4	1	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0007	2298	3	0	3	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0008	2298	3	0	0	3	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0009	2298	3	0	3	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0010	2298	2	2	0	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0011	2298	2	0	0	0	2	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0012	2298	2	0	1	1	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0013	2298	1	0	1	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0014	2298	1	1	0	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0015	2298	1	0	1	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0016	2298	1	1	0	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0017	2298	1	0	0	1	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0018	2298	1	0	0	0	0	1	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0019	2298	1	0	0	1	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0020	2298	1	0	0	0	1	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0021	2298	1	0	0	0	0	1	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0022	2298	1	0	1	0	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOP1B_chr21_36151824_36299274	0/0	a0023	2298	1	0	0	1	0	0	copy fasta	DOP1B	chr21	36151824	36299274
DOT1L_chr19_2158933_2237578	1/0	a0001	1537	191	45	32	78	7	28	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/1	a0002	1537	93	33	14	36	3	6	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	a0003	1537	66	5	19	27	7	8	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	a0004	1537	8	0	0	8	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	a0005	1537	4	4	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	a0006	1537	3	0	2	0	1	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	a0007	1537	2	0	0	2	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	a0008	1537	1	0	0	1	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	a0009	1537	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	a0010	1537	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	a0011	1537	1	0	1	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	a0012	1537	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	a0013	1537	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	a0014	1537	1	1	0	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	a0015	1537	1	0	0	1	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	a0016	1537	1	0	1	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	a0017	1537	1	0	1	0	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DOT1L_chr19_2158933_2237578	0/0	a0018	1537	1	0	0	1	0	0	copy fasta	DOT1L	chr19	2158933	2237578
DPAGT1_chr11_119091510_119106853	1/1	a0001	408	212	59	47	72	10	22	copy fasta	DPAGT1	chr11	119091510	119106853
DPAGT1_chr11_119091510_119106853	0/0	a0002	408	208	29	25	123	5	26	copy fasta	DPAGT1	chr11	119091510	119106853