Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADGRG4_chrX_136295963_136421890	0/0	a0032	3079	1	0	1	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0033	3079	1	0	0	1	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG4_chrX_136295963_136421890	0/0	a0034	3080	1	1	0	0	0	0	copy fasta	ADGRG4	chrX	136295963	136421890
ADGRG5_chr16_57537643_57582189	1/1	a0001	528	370	68	60	184	12	44	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	a0002	528	15	15	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	a0003	528	5	5	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	a0004	528	2	0	0	2	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	a0005	528	2	0	0	2	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	a0006	528	2	0	0	2	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	a0007	528	2	2	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	a0008	528	1	1	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	a0009	528	1	0	0	1	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	a0010	528	1	0	1	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	a0011	528	1	0	1	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	a0012	528	1	0	0	1	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	a0013	528	1	1	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	a0014	528	1	1	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG5_chr16_57537643_57582189	0/0	a0015	528	1	1	0	0	0	0	copy fasta	ADGRG5	chr16	57537643	57582189
ADGRG6_chr6_142297007_142451261	0/1	a0001	1250	178	44	32	80	10	11	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	a0002	1250	43	15	6	12	4	6	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	a0003	1250	13	1	8	3	0	1	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	a0004	1250	12	11	1	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	a0005	1250	11	2	0	9	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	a0006	1250	1	0	1	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	1/0	a0007	1250	1	0	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG6_chr6_142297007_142451261	0/0	a0008	1250	1	1	0	0	0	0	copy fasta	ADGRG6	chr6	142297007	142451261
ADGRG7_chr3_100604601_100700479	1/1	a0001	797	212	58	34	91	12	15	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	a0002	797	74	9	11	50	2	2	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	a0003	797	35	8	14	4	2	7	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	a0004	797	6	5	1	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	a0005	797	4	3	1	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	a0006	797	3	3	0	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	a0007	797	1	0	0	1	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	a0008	797	1	0	1	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	a0009	797	1	1	0	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	a0010	797	1	0	0	1	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	a0011	797	1	1	0	0	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRG7_chr3_100604601_100700479	0/0	a0012	797	1	0	0	1	0	0	copy fasta	ADGRG7	chr3	100604601	100700479
ADGRL1_chr19_14142743_14211169	0/0	a0000	0	1	0	0	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	1/1	a0001	1469	197	59	49	53	8	26	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	a0002	1469	21	14	6	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	a0003	1469	1	0	0	1	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	a0004	1469	1	1	0	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL1_chr19_14142743_14211169	0/0	a0005	1469	1	0	1	0	0	0	copy fasta	ADGRL1	chr19	14142743	14211169
ADGRL2_chr1_81795934_81998932	1/1	a0001	1469	279	78	61	90	11	37	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	a0002	1469	9	0	8	0	1	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	a0003	1469	4	4	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	a0004	1469	3	0	0	3	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	a0005	1469	2	0	2	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	a0006	1469	2	2	0	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932