JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DPAGT1_chr11_119091510_119106853	0/0	a0003	408	1	0	0	1	0	0	copy fasta	DPAGT1	chr11	119091510	119106853
DPAGT1_chr11_119091510_119106853	0/0	a0004	408	1	0	0	0	1	0	copy fasta	DPAGT1	chr11	119091510	119106853
DPCD_chr10_101583321_101614662	1/1	a0001	203	274	61	42	120	9	40	copy fasta	DPCD	chr10	101583321	101614662
DPCD_chr10_101583321_101614662	0/0	a0002	203	66	20	18	15	7	6	copy fasta	DPCD	chr10	101583321	101614662
DPCD_chr10_101583321_101614662	0/0	a0003	203	1	0	0	1	0	0	copy fasta	DPCD	chr10	101583321	101614662
DPCD_chr10_101583321_101614662	0/0	a0004	203	1	1	0	0	0	0	copy fasta	DPCD	chr10	101583321	101614662
DPEP1_chr16_89608642_89643433	1/1	a0001	411	169	60	35	43	11	18	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	a0002	411	70	7	21	33	1	8	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	a0003	411	6	6	0	0	0	0	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	a0004	411	2	0	2	0	0	0	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	a0005	411	1	0	0	0	0	1	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	a0006	411	1	0	0	0	0	1	copy fasta	DPEP1	chr16	89608642	89643433
DPEP1_chr16_89608642_89643433	0/0	a0007	411	1	1	0	0	0	0	copy fasta	DPEP1	chr16	89608642	89643433
DPEP2NB_chr16_68008436_68020911	1/1	a0001	123	360	92	72	138	16	40	copy fasta	DPEP2NB	chr16	68008436	68020911
DPEP2NB_chr16_68008436_68020911	0/0	a0002	123	1	0	0	1	0	0	copy fasta	DPEP2NB	chr16	68008436	68020911
DPEP2NB_chr16_68008436_68020911	0/0	a0003	123	1	0	0	1	0	0	copy fasta	DPEP2NB	chr16	68008436	68020911
DPEP2_chr16_67982394_68004484	1/1	a0001	486	327	82	63	130	15	35	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	a0002	486	14	9	5	0	0	0	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	a0003	486	10	0	3	7	0	0	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	a0004	486	1	0	0	1	0	0	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	a0005	209	1	0	1	0	0	0	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	a0006	486	1	1	0	0	0	0	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	a0007	486	1	0	0	0	0	1	copy fasta	DPEP2	chr16	67982394	68004484
DPEP2_chr16_67982394_68004484	0/0	a0008	486	1	0	0	0	1	0	copy fasta	DPEP2	chr16	67982394	68004484
DPEP3_chr16_67970663_67985499	1/1	a0001	488	309	76	71	107	18	35	copy fasta	DPEP3	chr16	67970663	67985499
DPEP3_chr16_67970663_67985499	0/0	a0002	488	15	13	1	0	0	1	copy fasta	DPEP3	chr16	67970663	67985499
DPEP3_chr16_67970663_67985499	0/0	a0003	488	4	4	0	0	0	0	copy fasta	DPEP3	chr16	67970663	67985499
DPEP3_chr16_67970663_67985499	0/0	a0004	488	1	1	0	0	0	0	copy fasta	DPEP3	chr16	67970663	67985499
DPEP3_chr16_67970663_67985499	0/0	a0005	488	1	0	0	1	0	0	copy fasta	DPEP3	chr16	67970663	67985499
DPEP3_chr16_67970663_67985499	0/0	a0006	488	1	0	0	1	0	0	copy fasta	DPEP3	chr16	67970663	67985499
DPEP3_chr16_67970663_67985499	0/0	a0007	488	1	0	0	1	0	0	copy fasta	DPEP3	chr16	67970663	67985499
DPF1_chr19_38206006_38229222	1/1	a0001	387	431	96	85	186	16	46	copy fasta	DPF1	chr19	38206006	38229222
DPF1_chr19_38206006_38229222	0/0	a0002	387	1	0	1	0	0	0	copy fasta	DPF1	chr19	38206006	38229222
DPF1_chr19_38206006_38229222	0/0	a0003	387	1	0	0	1	0	0	copy fasta	DPF1	chr19	38206006	38229222
DPF1_chr19_38206006_38229222	0/0	a0004	387	1	0	0	1	0	0	copy fasta	DPF1	chr19	38206006	38229222
DPF2_chr11_65328852_65359262	0/0	a0001	391	354	88	64	148	18	36	copy fasta	DPF2	chr11	65328852	65359262
DPF3_chr14_72604034_72899101	1/1	a0001	378	224	78	42	62	6	34	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	a0002	378	9	9	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPF3_chr14_72604034_72899101	0/0	a0003	378	1	1	0	0	0	0	copy fasta	DPF3	chr14	72604034	72899101
DPH1_chr17_2025153_2048898	1/1	a0001	438	335	90	38	157	10	38	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	a0002	438	40	0	28	7	1	4	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	a0003	438	14	0	5	0	3	6	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	a0004	438	1	0	0	1	0	0	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	a0005	438	1	0	1	0	0	0	copy fasta	DPH1	chr17	2025153	2048898
DPH1_chr17_2025153_2048898	0/0	a0006	438	1	0	0	1	0	0	copy fasta	DPH1	chr17	2025153	2048898
DPH2_chr1_43965010_43978369	1/1	a0001	489	377	82	68	177	12	36	copy fasta	DPH2	chr1	43965010	43978369
DPH2_chr1_43965010_43978369	0/0	a0002	489	4	0	0	4	0	0	copy fasta	DPH2	chr1	43965010	43978369
DPH2_chr1_43965010_43978369	0/0	a0003	489	1	1	0	0	0	0	copy fasta	DPH2	chr1	43965010	43978369
DPH2_chr1_43965010_43978369	0/0	a0004	489	1	1	0	0	0	0	copy fasta	DPH2	chr1	43965010	43978369
DPH2_chr1_43965010_43978369	0/0	a0005	489	1	0	0	1	0	0	copy fasta	DPH2	chr1	43965010	43978369