JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DPH3_chr3_16252061_16269943	1/1	a0001	82	456	96	84	218	10	46	copy fasta	DPH3	chr3	16252061	16269943
DPH5_chr1_100984623_101030784	1/1	a0001	285	275	78	43	102	14	36	copy fasta	DPH5	chr1	100984623	101030784
DPH5_chr1_100984623_101030784	0/0	a0002	285	5	4	1	0	0	0	copy fasta	DPH5	chr1	100984623	101030784
DPH5_chr1_100984623_101030784	0/0	a0003	285	2	2	0	0	0	0	copy fasta	DPH5	chr1	100984623	101030784
DPH6_chr15_35365880_35551165	1/1	a0001	267	210	77	30	77	8	16	copy fasta	DPH6	chr15	35365880	35551165
DPH6_chr15_35365880_35551165	0/0	a0002	267	10	8	2	0	0	0	copy fasta	DPH6	chr15	35365880	35551165
DPH6_chr15_35365880_35551165	0/0	a0003	267	7	0	2	5	0	0	copy fasta	DPH6	chr15	35365880	35551165
DPH6_chr15_35365880_35551165	0/0	a0004	267	1	1	0	0	0	0	copy fasta	DPH6	chr15	35365880	35551165
DPH7_chr9_137549444_137583925	1/1	a0001	452	324	78	74	111	16	43	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	a0002	452	9	9	0	0	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	a0003	452	2	2	0	0	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	a0004	452	2	0	0	2	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	a0005	452	1	0	0	1	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	a0006	452	1	0	0	0	0	1	copy fasta	DPH7	chr9	137549444	137583925
DPH7_chr9_137549444_137583925	0/0	a0007	452	1	1	0	0	0	0	copy fasta	DPH7	chr9	137549444	137583925
DPM1_chr20_50929870_50963532	1/1	a0001	260	379	90	70	165	14	38	copy fasta	DPM1	chr20	50929870	50963532
DPM1_chr20_50929870_50963532	0/0	a0002	260	1	0	0	1	0	0	copy fasta	DPM1	chr20	50929870	50963532
DPM2_chr9_127930099_127942854	0/1	a0001	84	237	55	54	93	10	24	copy fasta	DPM2	chr9	127930099	127942854
DPM2_chr9_127930099_127942854	1/0	a0002	84	153	35	10	89	2	16	copy fasta	DPM2	chr9	127930099	127942854
DPM3_chr1_155134891_155145531	1/1	a0001	92	348	91	60	129	18	48	copy fasta	DPM3	chr1	155134891	155145531
DPM3_chr1_155134891_155145531	0/0	a0002	92	1	1	0	0	0	0	copy fasta	DPM3	chr1	155134891	155145531
DPM3_chr1_155134891_155145531	0/0	a0003	80	1	0	0	1	0	0	copy fasta	DPM3	chr1	155134891	155145531
DPP10_chr2_114437641_115850780	0/0	a0001	796	23	14	4	3	1	1	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	a0002	796	18	9	2	3	1	3	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	a0003	796	7	7	0	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	a0004	796	4	3	1	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	a0005	796	2	1	1	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP10_chr2_114437641_115850780	0/0	a0006	796	2	2	0	0	0	0	copy fasta	DPP10	chr2	114437641	115850780
DPP3_chr11_66475434_66514657	1/1	a0001	737	211	47	32	95	11	24	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	a0002	737	94	10	16	56	3	9	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	a0003	737	11	0	10	0	0	1	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	a0004	737	10	9	1	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	a0005	737	5	5	0	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	a0006	737	5	5	0	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	a0007	737	4	3	1	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	a0008	737	3	2	0	1	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	a0009	737	1	0	0	1	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	a0010	737	1	0	0	1	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	a0011	737	1	1	0	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	a0012	737	1	1	0	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP3_chr11_66475434_66514657	0/0	a0013	737	1	1	0	0	0	0	copy fasta	DPP3	chr11	66475434	66514657
DPP4_chr2_161987245_162079215	1/1	a0001	766	286	86	45	97	16	40	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	a0002	766	2	2	0	0	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	a0003	766	1	0	1	0	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	a0004	766	1	0	0	1	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	a0005	766	1	1	0	0	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP4_chr2_161987245_162079215	0/0	a0006	766	1	1	0	0	0	0	copy fasta	DPP4	chr2	161987245	162079215
DPP6_chr7_154047398_154899285	0/0	a0001	865	20	7	3	8	0	2	copy fasta	DPP6	chr7	154047398	154899285
DPP6_chr7_154047398_154899285	0/0	a0002	865	18	9	5	4	0	0	copy fasta	DPP6	chr7	154047398	154899285
DPP7_chr9_137105546_137119733	0/0	a0000	0	15	13	1	1	0	0	copy fasta	DPP7	chr9	137105546	137119733