JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DPP7_chr9_137105546_137119733	0/1	a0001	492	331	82	59	133	15	41	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	1/0	a0002	492	92	2	24	56	2	7	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	a0003	492	2	0	0	2	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	a0004	492	2	0	0	2	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	a0005	492	2	0	1	0	1	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	a0006	492	2	0	0	2	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	a0007	492	1	0	0	1	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	a0008	492	1	0	1	0	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	a0009	492	1	0	0	0	0	1	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	a0010	492	1	0	0	1	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	a0011	492	1	0	0	1	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	a0012	492	1	1	0	0	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	a0013	492	1	0	0	0	0	1	copy fasta	DPP7	chr9	137105546	137119733
DPP7_chr9_137105546_137119733	0/0	a0014	492	1	0	0	1	0	0	copy fasta	DPP7	chr9	137105546	137119733
DPP8_chr15_65437467_65522689	1/1	a0001	882	333	87	59	125	14	46	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	a0002	882	1	0	0	1	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	a0003	882	1	0	1	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP8_chr15_65437467_65522689	0/0	a0004	882	1	1	0	0	0	0	copy fasta	DPP8	chr15	65437467	65522689
DPP9_chr19_4670227_4728842	1/1	a0001	892	302	87	72	87	13	41	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	a0002	892	3	3	0	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	a0003	892	2	0	2	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	a0004	892	1	0	0	1	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	a0005	892	1	0	1	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	a0006	892	1	0	1	0	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	a0007	892	1	0	0	1	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	a0008	892	1	0	0	0	1	0	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	a0009	892	1	0	0	0	0	1	copy fasta	DPP9	chr19	4670227	4728842
DPP9_chr19_4670227_4728842	0/0	a0010	892	1	0	0	1	0	0	copy fasta	DPP9	chr19	4670227	4728842
DPPA2_chr3_109288788_109321517	1/1	a0001	298	408	86	80	176	18	46	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	a0002	298	10	10	0	0	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	a0003	298	1	1	0	0	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	a0004	298	1	0	1	0	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	a0005	298	1	0	1	0	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA2_chr3_109288788_109321517	0/0	a0006	298	1	1	0	0	0	0	copy fasta	DPPA2	chr3	109288788	109321517
DPPA3_chr12_7706433_7722559	1/1	a0001	159	385	81	66	185	13	38	copy fasta	DPPA3	chr12	7706433	7722559
DPPA3_chr12_7706433_7722559	0/0	a0002	159	80	16	14	35	5	10	copy fasta	DPPA3	chr12	7706433	7722559
DPPA3_chr12_7706433_7722559	0/0	a0003	159	1	1	0	0	0	0	copy fasta	DPPA3	chr12	7706433	7722559
DPPA4_chr3_109321144_109342546	0/0	a0001	304	208	19	34	124	9	22	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	1/1	a0002	304	180	57	41	61	5	14	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	a0003	294	24	21	2	1	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	a0004	304	2	0	0	2	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	a0005	294	1	1	0	0	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA4_chr3_109321144_109342546	0/0	a0006	304	1	0	1	0	0	0	copy fasta	DPPA4	chr3	109321144	109342546
DPPA5_chr6_73348063_73359276	1/1	a0001	116	427	98	80	193	16	38	copy fasta	DPPA5	chr6	73348063	73359276
DPPA5_chr6_73348063_73359276	0/0	a0002	116	1	0	0	1	0	0	copy fasta	DPPA5	chr6	73348063	73359276
DPRX_chr19_53626999_53642014	1/1	a0001	191	471	94	87	220	18	50	copy fasta	DPRX	chr19	53626999	53642014
DPRX_chr19_53626999_53642014	0/0	a0002	167	7	6	1	0	0	0	copy fasta	DPRX	chr19	53626999	53642014
DPT_chr1_168690468_168734206	1/1	a0001	201	417	93	71	184	18	49	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	a0002	201	10	0	10	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	a0003	201	3	3	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206