JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DPT_chr1_168690468_168734206	0/0	a0004	201	1	0	0	1	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	a0005	201	1	1	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	a0006	201	1	1	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	a0007	201	1	0	0	1	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	a0008	201	1	1	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	a0009	201	1	0	1	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	a0010	201	1	0	0	0	0	1	copy fasta	DPT	chr1	168690468	168734206
DPT_chr1_168690468_168734206	0/0	a0011	201	1	1	0	0	0	0	copy fasta	DPT	chr1	168690468	168734206
DPY19L1_chr7_34923881_35042485	1/1	a0001	748	266	69	46	127	1	21	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	a0002	748	54	11	14	21	1	7	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	a0003	748	1	0	1	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	a0004	748	1	0	0	1	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	a0005	748	1	0	0	1	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	a0006	748	1	0	1	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	a0007	748	1	1	0	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	a0008	748	1	1	0	0	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	a0009	741	1	0	0	1	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L1_chr7_34923881_35042485	0/0	a0010	748	1	0	0	1	0	0	copy fasta	DPY19L1	chr7	34923881	35042485
DPY19L2_chr12_63553913_63673493	0/0	a0001	758	159	33	18	92	1	15	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	1/1	a0002	758	155	25	38	69	6	15	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	a0003	758	34	16	9	0	5	4	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	a0004	758	6	5	1	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	a0005	758	2	2	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	a0006	758	1	1	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	a0007	758	1	1	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	a0008	758	1	0	0	1	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	a0009	758	1	1	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	a0010	758	1	1	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L2_chr12_63553913_63673493	0/0	a0011	758	1	1	0	0	0	0	copy fasta	DPY19L2	chr12	63553913	63673493
DPY19L3_chr19_32400770_32490890	1/1	a0001	716	375	77	64	174	14	44	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	a0002	716	5	5	0	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	a0003	716	1	0	1	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	a0004	716	1	0	1	0	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	a0005	716	1	0	0	1	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L3_chr19_32400770_32490890	0/0	a0006	716	1	0	0	1	0	0	copy fasta	DPY19L3	chr19	32400770	32490890
DPY19L4_chr8_94714900_94798836	1/1	a0001	723	275	85	51	105	6	26	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	a0002	723	5	5	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	a0003	723	3	0	0	3	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	a0004	723	2	2	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	a0005	723	1	0	1	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	a0006	723	1	0	0	1	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	a0007	723	1	1	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	a0008	723	1	0	0	1	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY19L4_chr8_94714900_94798836	0/0	a0009	723	1	1	0	0	0	0	copy fasta	DPY19L4	chr8	94714900	94798836
DPY30_chr2_32018905_32044805	1/1	a0001	99	383	94	68	169	14	36	copy fasta	DPY30	chr2	32018905	32044805
DPY30_chr2_32018905_32044805	0/0	a0002	99	1	0	0	1	0	0	copy fasta	DPY30	chr2	32018905	32044805
DPYD_chr1_97072743_97926034	1/1	a0001	1025	16	7	2	2	1	2	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	a0002	1025	11	11	0	0	0	0	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	a0003	1025	7	0	1	2	1	3	copy fasta	DPYD	chr1	97072743	97926034
DPYD_chr1_97072743_97926034	0/0	a0004	1025	5	2	3	0	0	0	copy fasta	DPYD	chr1	97072743	97926034