JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DRAXIN_chr1_11686710_11730857	0/0	a0002	349	86	9	12	54	4	7	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	a0003	349	10	0	5	5	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	a0004	349	7	7	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	a0005	349	3	0	0	3	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	a0006	349	3	0	3	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	a0007	349	2	0	0	0	0	2	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	a0008	349	2	2	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	a0009	349	1	1	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	a0010	349	1	0	1	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	a0011	349	1	0	0	1	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRAXIN_chr1_11686710_11730857	0/0	a0012	349	1	1	0	0	0	0	copy fasta	DRAXIN	chr1	11686710	11730857
DRC1_chr2_26396920_26461711	0/0	a0000	0	1	1	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/1	a0001	740	127	45	29	30	6	16	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0002	740	101	2	17	80	0	2	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0003	740	49	31	9	8	0	1	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0004	740	40	0	7	21	2	10	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0005	740	14	0	4	10	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0006	740	10	0	0	10	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0007	740	9	0	0	7	0	2	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0008	740	8	8	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0009	740	4	3	1	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0010	740	4	0	2	0	2	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0011	740	3	2	1	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0012	740	3	1	2	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0013	740	1	1	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0014	740	1	0	1	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0015	740	1	1	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0016	740	1	1	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0017	740	1	0	0	1	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0018	740	1	0	0	1	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0019	735	1	0	1	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0020	740	1	0	0	1	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0021	740	1	0	0	1	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	0/0	a0022	740	1	0	0	0	0	1	copy fasta	DRC1	chr2	26396920	26461711
DRC1_chr2_26396920_26461711	1/0	a0023	740	1	0	0	0	0	0	copy fasta	DRC1	chr2	26396920	26461711
DRC3_chr17_17967862_18021889	0/1	a0001	523	168	23	29	101	3	11	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	1/0	a0002	523	119	46	32	30	5	5	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	a0003	523	11	7	4	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	a0004	523	6	0	3	0	2	1	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	a0005	523	4	4	0	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	a0006	523	4	4	0	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	a0007	523	3	0	3	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	a0008	523	1	1	0	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	a0009	523	1	1	0	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	a0010	523	1	1	0	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	a0011	523	1	0	0	0	0	1	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	a0012	523	1	0	0	1	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	a0013	523	1	0	1	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	a0014	523	1	0	0	1	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC3_chr17_17967862_18021889	0/0	a0015	523	1	0	0	1	0	0	copy fasta	DRC3	chr17	17967862	18021889