JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DRC3_chr17_17967862_18021889	0/0	a0016	523	1	1	0	0	0	0	copy fasta	DRC3	chr17	17967862	18021889
DRC7_chr16_57689806_57736805	1/1	a0001	874	163	10	34	89	5	23	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0002	874	55	12	7	22	6	8	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0003	874	49	3	10	35	0	1	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0004	874	30	24	2	3	0	1	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0005	874	22	3	0	8	2	9	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0006	874	14	14	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0007	874	13	5	5	0	0	3	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0008	874	11	4	4	0	1	2	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0009	874	8	5	2	0	0	1	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0010	874	4	0	3	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0011	874	3	3	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0012	874	1	1	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0013	874	1	0	1	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0014	874	1	0	0	0	0	1	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0015	674	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0016	874	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0017	874	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0018	874	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0019	874	1	1	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0020	874	1	1	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0021	874	1	1	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0022	874	1	0	0	0	0	1	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0023	874	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0024	874	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0025	874	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0026	587	1	1	0	0	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRC7_chr16_57689806_57736805	0/0	a0027	874	1	0	0	1	0	0	copy fasta	DRC7	chr16	57689806	57736805
DRD1_chr5_175435036_175449182	1/1	a0001	446	486	100	84	233	18	49	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	a0002	386	1	0	0	0	0	1	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	a0003	446	1	0	0	1	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	a0004	446	1	0	0	1	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD1_chr5_175435036_175449182	0/0	a0005	63	1	0	0	1	0	0	copy fasta	DRD1	chr5	175435036	175449182
DRD2_chr11_113404605_113480398	1/1	a0001	443	326	76	72	133	8	35	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	a0002	443	13	0	2	8	0	3	copy fasta	DRD2	chr11	113404605	113480398
DRD2_chr11_113404605_113480398	0/0	a0003	443	1	0	0	1	0	0	copy fasta	DRD2	chr11	113404605	113480398
DRD3_chr3_114122580_114184052	1/0	a0001	400	181	74	38	47	3	18	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/1	a0002	400	168	19	30	82	11	25	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	a0003	400	8	0	0	7	0	1	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	a0004	400	1	0	0	1	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	a0005	400	1	0	0	1	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD3_chr3_114122580_114184052	0/0	a0006	400	1	1	0	0	0	0	copy fasta	DRD3	chr3	114122580	114184052
DRD4_chr11_632269_645706	0/0	a0000	0	14	2	5	5	0	2	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0001	419	217	38	31	112	5	31	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/1	a0002	467	43	18	17	3	3	1	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0003	415	37	0	4	28	1	4	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0004	387	35	2	4	23	3	3	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0005	419	19	13	4	2	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0006	467	5	5	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0007	419	5	5	0	0	0	0	copy fasta	DRD4	chr11	632269	645706