JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DRD4_chr11_632269_645706	0/0	a0008	419	4	4	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0009	431	4	0	0	4	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0010	419	3	3	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0011	419	2	0	2	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0012	467	2	0	2	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0013	451	2	0	0	2	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0014	403	2	0	0	2	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0015	435	2	0	1	0	0	1	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0016	435	2	0	0	2	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0017	419	1	0	0	0	1	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0018	387	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0019	403	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0020	467	1	1	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0021	435	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0022	483	1	0	0	0	1	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0023	467	1	0	0	0	0	1	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0024	452	1	0	0	1	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0025	393	1	0	0	0	0	1	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0026	435	1	1	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0027	419	1	1	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0028	515	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0029	451	1	1	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0030	451	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0031	419	1	1	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0032	419	1	0	0	1	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0033	419	1	1	0	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0034	419	1	0	0	1	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0035	383	1	0	0	0	1	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0036	463	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0037	463	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0038	399	1	0	1	0	0	0	copy fasta	DRD4	chr11	632269	645706
DRD4_chr11_632269_645706	0/0	a0039	467	1	0	0	0	1	0	copy fasta	DRD4	chr11	632269	645706
DRD5_chr4_9776634_9789009	1/1	a0001	477	428	91	75	199	18	43	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	a0002	477	21	4	0	14	0	3	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	a0003	477	3	0	3	0	0	0	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	a0004	477	1	1	0	0	0	0	copy fasta	DRD5	chr4	9776634	9789009
DRD5_chr4_9776634_9789009	0/0	a0005	477	1	0	0	1	0	0	copy fasta	DRD5	chr4	9776634	9789009
DRG1_chr22_31394604_31439452	1/1	a0001	367	349	84	59	148	14	42	copy fasta	DRG1	chr22	31394604	31439452
DRG1_chr22_31394604_31439452	0/0	a0002	367	1	0	1	0	0	0	copy fasta	DRG1	chr22	31394604	31439452
DRG2_chr17_18082948_18112969	1/1	a0001	364	411	90	76	185	18	40	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	a0002	364	3	0	3	0	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	a0003	364	3	2	1	0	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRG2_chr17_18082948_18112969	0/0	a0004	364	1	0	0	1	0	0	copy fasta	DRG2	chr17	18082948	18112969
DRGX_chr10_49359066_49401089	1/1	a0001	263	366	96	59	159	16	34	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	a0002	263	1	0	0	1	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRGX_chr10_49359066_49401089	0/0	a0003	263	1	0	1	0	0	0	copy fasta	DRGX	chr10	49359066	49401089
DRICH1_chr22_23603452_23637321	1/0	a0001	229	307	65	56	137	13	35	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/1	a0002	228	62	9	10	38	1	3	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	a0003	228	53	4	10	32	1	6	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	a0004	229	5	5	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321