JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DRICH1_chr22_23603452_23637321	0/0	a0005	230	3	3	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	a0006	229	3	3	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	a0007	229	3	3	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	a0008	228	2	0	0	1	1	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	a0009	229	2	2	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	a0010	228	2	0	2	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	a0011	229	2	1	1	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	a0012	230	1	0	1	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DRICH1_chr22_23603452_23637321	0/0	a0013	229	1	1	0	0	0	0	copy fasta	DRICH1	chr22	23603452	23637321
DROSHA_chr5_31395494_31537093	1/1	a0001	1374	244	74	35	111	9	13	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	a0002	1374	58	1	8	29	3	17	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	a0003	1374	10	10	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	a0004	1374	6	5	1	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	a0005	1374	1	0	0	1	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	a0006	1374	1	1	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	a0007	1374	1	1	0	0	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DROSHA_chr5_31395494_31537093	0/0	a0008	94	1	0	0	1	0	0	copy fasta	DROSHA	chr5	31395494	31537093
DRP2_chrX_101214786_101269502	1/0	a0001	957	217	63	35	87	8	23	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/1	a0002	957	38	12	12	7	5	1	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	a0003	957	1	1	0	0	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	a0004	957	1	0	0	0	0	1	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	a0005	957	1	0	0	1	0	0	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	a0006	957	1	0	0	0	0	1	copy fasta	DRP2	chrX	101214786	101269502
DRP2_chrX_101214786_101269502	0/0	a0007	748	1	0	0	1	0	0	copy fasta	DRP2	chrX	101214786	101269502
DSC1_chr18_31124236_31167856	1/0	a0001	894	219	64	44	70	14	26	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	a0002	894	104	0	20	74	0	10	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/1	a0003	894	26	20	4	0	0	1	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	a0004	894	9	0	0	9	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	a0005	894	5	1	1	0	1	2	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	a0006	894	4	4	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	a0007	894	3	3	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	a0008	894	2	0	1	0	1	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	a0009	894	2	2	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	a0010	894	1	1	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	a0011	894	1	0	0	1	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	a0012	894	1	1	0	0	0	0	copy fasta	DSC1	chr18	31124236	31167856
DSC1_chr18_31124236_31167856	0/0	a0013	894	1	0	0	0	0	1	copy fasta	DSC1	chr18	31124236	31167856
DSC2_chr18_31053840_31107421	1/0	a0001	901	287	44	59	135	8	40	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/1	a0002	901	57	25	11	18	2	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	a0003	901	10	1	3	1	2	3	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	a0004	901	10	9	1	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	a0005	901	8	7	1	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	a0006	901	2	2	0	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	a0007	901	2	0	2	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	a0008	901	1	0	0	0	0	1	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	a0009	901	1	0	0	1	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	a0010	901	1	0	1	0	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC2_chr18_31053840_31107421	0/0	a0011	901	1	0	0	1	0	0	copy fasta	DSC2	chr18	31053840	31107421
DSC3_chr18_30984365_31047742	0/0	a0001	896	193	27	30	107	3	26	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	1/1	a0002	896	165	57	37	47	10	12	copy fasta	DSC3	chr18	30984365	31047742