JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DSC3_chr18_30984365_31047742	0/0	a0003	896	20	0	7	9	2	2	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	a0004	896	3	3	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	a0005	896	3	0	0	3	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	a0006	896	1	0	0	0	1	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	a0007	896	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	a0008	896	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	a0009	896	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	a0010	896	1	0	1	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	a0011	896	1	1	0	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	a0012	896	1	0	0	1	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSC3_chr18_30984365_31047742	0/0	a0013	896	1	0	1	0	0	0	copy fasta	DSC3	chr18	30984365	31047742
DSCAML1_chr11_117422772_117802216	0/0	a0001	2053	100	45	16	29	0	10	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	a0002	2053	85	33	22	18	6	6	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	a0003	2053	4	0	0	4	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	a0004	2053	2	0	0	2	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	a0005	2053	2	0	0	2	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCAML1_chr11_117422772_117802216	0/0	a0006	2053	1	0	0	1	0	0	copy fasta	DSCAML1	chr11	117422772	117802216
DSCC1_chr8_119828976_119860894	0/1	a0001	393	234	69	55	65	11	33	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	1/0	a0002	393	137	16	17	83	5	15	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	a0003	393	3	3	0	0	0	0	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	a0004	393	1	0	0	1	0	0	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	a0005	357	1	1	0	0	0	0	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	a0006	393	1	0	0	1	0	0	copy fasta	DSCC1	chr8	119828976	119860894
DSCC1_chr8_119828976_119860894	0/0	a0007	393	1	1	0	0	0	0	copy fasta	DSCC1	chr8	119828976	119860894
DSEL_chr18_67501587_67521720	0/0	a0001	1212	240	58	37	110	6	29	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/1	a0002	1212	160	32	27	82	7	11	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	a0003	1212	13	0	12	1	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	a0004	1212	2	1	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	a0005	1212	1	0	0	0	0	1	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	a0006	1212	1	1	0	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	a0007	1212	1	0	1	0	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	a0008	1212	1	0	0	0	0	1	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	a0009	1212	1	0	0	1	0	0	copy fasta	DSEL	chr18	67501587	67521720
DSEL_chr18_67501587_67521720	0/0	a0010	1212	1	0	0	0	1	0	copy fasta	DSEL	chr18	67501587	67521720
DSE_chr6_116365947_116449861	1/1	a0001	958	283	63	43	131	14	30	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	a0002	958	51	11	17	16	3	4	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	a0003	958	8	0	3	2	0	3	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	a0004	957	5	5	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	a0005	958	5	5	0	0	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	a0006	958	4	0	3	0	0	1	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	a0007	958	4	2	1	0	0	1	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	a0008	958	3	0	1	0	1	1	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	a0009	958	1	0	0	0	0	1	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	a0010	958	1	0	0	1	0	0	copy fasta	DSE	chr6	116365947	116449861
DSE_chr6_116365947_116449861	0/0	a0011	958	1	0	0	0	0	1	copy fasta	DSE	chr6	116365947	116449861
DSG1_chr18_31313160_31364246	1/0	a0001	1049	123	13	19	74	5	11	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/1	a0002	1049	62	14	15	18	2	12	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0003	1049	19	6	2	8	0	3	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0004	1049	17	15	2	0	0	0	copy fasta	DSG1	chr18	31313160	31364246
DSG1_chr18_31313160_31364246	0/0	a0005	1049	12	4	0	6	1	1	copy fasta	DSG1	chr18	31313160	31364246