Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADGRL2_chr1_81795934_81998932	0/0	a0007	1469	2	0	2	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	a0008	1469	2	0	1	0	0	1	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	a0009	1469	1	0	0	1	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	a0010	1469	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL2_chr1_81795934_81998932	0/0	a0011	1469	1	0	1	0	0	0	copy fasta	ADGRL2	chr1	81795934	81998932
ADGRL3_chr4_61195326_62083335	1/1	a0001	1543	55	40	7	0	0	6	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	a0002	1543	1	0	1	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	a0003	1543	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL3_chr4_61195326_62083335	0/0	a0004	1543	1	1	0	0	0	0	copy fasta	ADGRL3	chr4	61195326	62083335
ADGRL4_chr1_78884764_79011730	0/1	a0001	690	229	41	43	112	8	24	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	a0002	690	98	25	14	45	5	9	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	1/0	a0003	690	49	20	13	13	0	2	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	a0004	690	2	2	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	a0005	690	2	2	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	a0006	690	2	0	1	0	1	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	a0007	690	2	0	0	0	0	2	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	a0008	690	1	0	1	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	a0009	690	1	1	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	a0010	690	1	0	0	1	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	a0011	690	1	0	0	1	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	a0012	690	1	0	0	0	0	1	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRL4_chr1_78884764_79011730	0/0	a0013	690	1	1	0	0	0	0	copy fasta	ADGRL4	chr1	78884764	79011730
ADGRV1_chr5_90553797_91169437	0/0	a0001	6306	19	6	5	6	0	2	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0002	6306	19	1	6	10	0	2	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/1	a0003	6306	18	3	2	9	1	2	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0004	6306	10	1	2	5	1	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0005	6306	5	0	0	5	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0006	6306	3	0	1	0	0	2	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0007	6306	2	1	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0008	6306	2	0	0	0	0	2	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0009	6306	2	1	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0010	6306	2	1	0	1	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0011	6306	2	2	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0012	6306	2	2	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0013	6306	2	1	0	1	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0014	6306	2	2	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0015	6306	2	2	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0016	6306	2	2	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0017	6306	2	2	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0018	6306	2	0	0	0	0	2	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0019	6306	2	2	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0020	6306	2	0	0	2	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0021	6306	2	0	0	0	0	2	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0022	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0023	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0024	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0025	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0026	6306	1	0	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0027	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0028	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437