JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DSG3_chr18_31442741_31483702	0/1	a0004	999	7	0	1	0	3	2	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	a0005	999	2	0	2	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	a0006	999	2	2	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	a0007	999	2	0	2	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	a0008	999	2	2	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	a0009	999	1	0	1	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	a0010	999	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	a0011	999	1	0	1	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	a0012	999	1	1	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	a0013	999	1	0	0	1	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	a0014	999	1	0	0	1	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	1/0	a0015	999	1	0	0	0	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG3_chr18_31442741_31483702	0/0	a0016	999	1	0	0	1	0	0	copy fasta	DSG3	chr18	31442741	31483702
DSG4_chr18_31371777_31419909	0/1	a0001	1040	302	64	47	149	9	32	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0002	1040	6	6	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	1/0	a0003	1040	4	0	2	0	0	1	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0004	1040	4	0	0	0	0	4	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0005	1040	3	2	0	0	0	1	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0006	1040	3	0	0	3	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0007	1040	3	3	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0008	1040	2	2	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0009	1040	2	2	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0010	1040	2	2	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0011	1040	2	2	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0012	1040	1	0	0	0	0	1	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0013	1040	1	0	0	0	0	1	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0014	1040	1	0	0	1	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0015	1040	1	0	1	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0016	1040	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0017	1053	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0018	1040	1	0	0	1	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0019	1040	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0020	1040	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0021	1040	1	1	0	0	0	0	copy fasta	DSG4	chr18	31371777	31419909
DSG4_chr18_31371777_31419909	0/0	a0022	1040	1	0	0	0	1	0	copy fasta	DSG4	chr18	31371777	31419909
DSN1_chr20_36746795_36778763	1/1	a0001	356	328	77	76	116	16	41	copy fasta	DSN1	chr20	36746795	36778763
DSN1_chr20_36746795_36778763	0/0	a0002	356	3	3	0	0	0	0	copy fasta	DSN1	chr20	36746795	36778763
DSN1_chr20_36746795_36778763	0/0	a0003	341	1	0	0	0	0	1	copy fasta	DSN1	chr20	36746795	36778763
DSPP_chr4_87603529_87621873	0/0	a0001	1250	60	1	18	36	4	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0002	1265	57	1	5	50	1	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0003	1259	53	0	5	36	0	12	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/1	a0004	1250	52	7	14	23	2	5	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	1/0	a0005	1301	40	6	5	24	0	4	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0006	1258	30	3	8	17	0	2	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0007	1256	30	27	3	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0008	1253	10	0	6	0	3	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0009	1250	8	1	1	2	1	3	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0010	1247	7	0	2	4	0	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0011	1250	6	6	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0012	1241	6	5	1	0	0	0	copy fasta	DSPP	chr4	87603529	87621873