JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DSPP_chr4_87603529_87621873	0/0	a0013	1252	6	0	1	5	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0014	1244	6	6	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0015	1259	5	0	0	0	0	5	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0016	1241	5	5	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0017	1295	4	0	0	4	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0018	1232	4	1	3	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0019	1254	4	4	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0020	1250	4	4	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0021	1244	3	0	0	3	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0022	1295	3	0	0	0	0	3	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0023	1250	3	0	0	3	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0024	1244	2	0	0	2	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0025	1250	2	0	2	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0026	1295	2	0	1	1	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0027	1364	2	0	0	0	0	2	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0028	1249	2	2	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0029	1253	2	0	0	1	0	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0030	1238	2	2	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0031	1254	2	2	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0032	1244	2	2	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0033	1238	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0034	1244	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0035	1249	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0036	1241	1	0	1	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0037	1247	1	0	0	1	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0038	1307	1	0	0	1	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0039	1295	1	0	0	0	0	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0040	1270	1	0	0	0	0	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0041	1250	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0042	1250	1	0	0	0	0	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0043	1208	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0044	1241	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0045	1301	1	0	1	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0046	1245	1	0	0	1	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0047	1258	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0048	1286	1	0	0	0	1	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0049	1301	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0050	1265	1	0	0	1	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0051	1259	1	0	0	1	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0052	1259	1	0	0	1	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0053	1265	1	0	0	1	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0054	1250	1	0	1	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0055	1256	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0056	1268	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0057	1250	1	0	0	0	0	1	copy fasta	DSPP	chr4	87603529	87621873
DSPP_chr4_87603529_87621873	0/0	a0058	1256	1	1	0	0	0	0	copy fasta	DSPP	chr4	87603529	87621873
DSP_chr6_7536671_7591714	1/1	a0001	2871	165	26	40	67	7	23	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0002	2871	86	22	16	43	1	4	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0003	2871	66	17	9	33	2	5	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0004	2871	12	11	1	0	0	0	copy fasta	DSP	chr6	7536671	7591714