JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DSP_chr6_7536671_7591714	0/0	a0005	2871	11	0	1	10	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0006	2871	6	0	0	6	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0007	2871	4	0	2	0	1	1	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0008	2871	4	0	0	4	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0009	2871	4	4	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0010	2871	3	0	2	0	0	1	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0011	2871	3	3	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0012	2871	2	0	0	2	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0013	2871	2	0	0	0	2	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0014	2871	2	0	0	2	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0015	2871	2	0	0	0	0	2	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0016	2871	2	2	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0017	2871	1	0	1	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0018	2871	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0019	2871	1	0	0	0	1	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0020	2871	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0021	2871	1	0	0	1	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0022	2871	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0023	2871	1	0	0	0	0	1	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0024	2871	1	0	0	1	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0025	2871	1	0	0	1	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0026	2871	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0027	2871	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0028	2871	1	0	0	1	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0029	2871	1	0	0	1	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0030	2871	1	0	0	0	0	1	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0031	2871	1	0	0	1	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0032	2871	1	0	1	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0033	2871	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0034	2871	1	0	1	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0035	2871	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0036	2871	1	0	0	1	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0037	2871	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSP_chr6_7536671_7591714	0/0	a0038	2871	1	1	0	0	0	0	copy fasta	DSP	chr6	7536671	7591714
DSTN_chr20_17565075_17614919	1/1	a0001	165	348	94	66	144	8	34	copy fasta	DSTN	chr20	17565075	17614919
DSTYK_chr1_205137505_205216702	0/1	a0001	929	310	87	55	123	12	32	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	a0002	929	15	0	3	10	0	2	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	1/0	a0003	929	9	1	1	0	1	5	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	a0004	929	7	0	5	0	2	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	a0005	929	1	0	1	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	a0006	929	1	0	0	1	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	a0007	929	1	0	0	1	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	a0008	929	1	0	0	0	1	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	a0009	929	1	0	0	0	0	1	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	a0010	929	1	0	0	1	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DSTYK_chr1_205137505_205216702	0/0	a0011	929	1	0	1	0	0	0	copy fasta	DSTYK	chr1	205137505	205216702
DST_chr6_56452996_56959830	0/1	a0001	7818	14	5	1	5	1	1	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0002	7818	5	4	1	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0003	7818	4	4	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0004	7818	4	2	2	0	0	0	copy fasta	DST	chr6	56452996	56959830