JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DST_chr6_56452996_56959830	0/0	a0005	7818	4	1	0	3	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0006	7818	3	3	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0007	7818	3	3	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0008	7818	2	1	1	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0009	7818	2	2	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0010	7818	2	2	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0011	7818	2	0	1	0	1	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0012	7818	2	2	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0013	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0014	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0015	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0016	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0017	7818	1	0	1	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0018	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0019	7818	1	0	0	0	0	1	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0020	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0021	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0022	7818	1	0	0	1	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0023	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0024	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0025	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0026	7818	1	0	1	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0027	7818	1	0	0	1	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0028	7818	1	0	1	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0029	7818	1	0	0	1	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0030	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0031	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0032	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0033	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0034	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0035	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0036	7818	1	0	0	1	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0037	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0038	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0039	7818	1	0	1	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0040	7818	1	0	1	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0041	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0042	7818	1	0	0	1	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0043	7818	1	0	0	1	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0044	7818	1	0	0	1	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0045	7818	1	0	0	1	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	1/0	a0046	7818	1	0	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0047	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0048	7818	1	1	0	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56452996_56959830	0/0	a0049	7818	1	0	1	0	0	0	copy fasta	DST	chr6	56452996	56959830
DST_chr6_56609597_56647889	1/1	a0001	2649	166	32	28	79	6	19	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0002	2649	96	12	23	44	4	13	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0003	2649	11	10	0	1	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0004	2649	10	9	1	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0005	2649	6	6	0	0	0	0	copy fasta	DST	chr6	56609597	56647889