JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DST_chr6_56609597_56647889	0/0	a0006	2649	5	4	1	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0007	2649	4	0	2	0	2	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0008	2649	4	4	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0009	2649	2	0	2	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0010	2649	1	0	1	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0011	2649	1	0	0	0	0	1	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0012	2649	1	0	0	1	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0013	2649	1	0	0	1	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0014	2649	1	0	0	0	0	1	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0015	2649	1	0	0	0	0	1	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0016	2649	1	0	1	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0017	2649	1	1	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0018	2620	1	0	0	1	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0019	2649	1	0	0	1	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0020	2649	1	0	1	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0021	2649	1	0	0	1	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0022	2649	1	0	1	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0023	2649	1	0	0	1	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0024	2649	1	0	1	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0025	2649	1	1	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0026	2649	1	1	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0027	2649	1	1	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0028	2649	1	1	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0029	2649	1	1	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0030	2649	1	0	0	0	0	1	copy fasta	DST	chr6	56609597	56647889
DST_chr6_56609597_56647889	0/0	a0031	2649	1	1	0	0	0	0	copy fasta	DST	chr6	56609597	56647889
DTD1_chr20_18583054_18771644	1/1	a0001	209	391	89	76	168	16	40	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	a0002	209	6	6	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD1_chr20_18583054_18771644	0/0	a0003	209	1	1	0	0	0	0	copy fasta	DTD1	chr20	18583054	18771644
DTD2_chr14_31441036_31462506	1/1	a0001	168	417	91	74	194	12	44	copy fasta	DTD2	chr14	31441036	31462506
DTD2_chr14_31441036_31462506	0/0	a0002	168	1	1	0	0	0	0	copy fasta	DTD2	chr14	31441036	31462506
DTHD1_chr4_36276616_36352511	0/1	a0001	906	150	50	29	56	4	10	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0002	906	41	14	8	15	1	3	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0003	906	26	13	3	8	1	1	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0004	906	25	4	7	7	5	2	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0005	906	15	1	2	7	0	5	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0006	906	10	3	3	4	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	1/0	a0007	906	8	0	7	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0008	906	5	0	0	5	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0009	906	4	1	1	0	0	2	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0010	906	4	0	0	1	0	3	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0011	906	4	3	1	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0012	906	2	0	1	0	0	1	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0013	906	2	2	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0014	906	1	0	0	0	1	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0015	906	1	0	0	1	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0016	906	1	0	0	1	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0017	906	1	1	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0018	906	1	0	0	1	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0019	906	1	0	0	0	0	1	copy fasta	DTHD1	chr4	36276616	36352511