JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DTHD1_chr4_36276616_36352511	0/0	a0020	906	1	0	0	1	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0021	906	1	1	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0022	906	1	1	0	0	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0023	906	1	0	0	0	1	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0024	906	1	0	0	1	0	0	copy fasta	DTHD1	chr4	36276616	36352511
DTHD1_chr4_36276616_36352511	0/0	a0025	906	1	0	0	0	1	0	copy fasta	DTHD1	chr4	36276616	36352511
DTL_chr1_212030748_212110013	0/1	a0001	730	350	75	61	154	16	43	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	a0002	730	5	5	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	a0003	730	3	0	3	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	a0004	730	1	0	0	0	0	1	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	a0005	730	1	1	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	a0006	730	1	1	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	1/0	a0007	730	1	0	0	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	a0008	730	1	0	1	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTL_chr1_212030748_212110013	0/0	a0009	730	1	0	1	0	0	0	copy fasta	DTL	chr1	212030748	212110013
DTNA_chr18_34705298_34896844	1/1	a0001	770	110	65	21	4	2	16	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	a0002	770	1	1	0	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNA_chr18_34705298_34896844	0/0	a0003	770	1	0	1	0	0	0	copy fasta	DTNA	chr18	34705298	34896844
DTNBP1_chr6_15517807_15668028	1/1	a0001	351	295	73	62	114	10	34	copy fasta	DTNBP1	chr6	15517807	15668028
DTNBP1_chr6_15517807_15668028	0/0	a0002	351	12	11	1	0	0	0	copy fasta	DTNBP1	chr6	15517807	15668028
DTNBP1_chr6_15517807_15668028	0/0	a0003	351	4	0	0	0	4	0	copy fasta	DTNBP1	chr6	15517807	15668028
DTNBP1_chr6_15517807_15668028	0/0	a0004	351	3	2	1	0	0	0	copy fasta	DTNBP1	chr6	15517807	15668028
DTNB_chr2_25372243_25678577	1/1	a0001	627	163	57	38	44	7	15	copy fasta	DTNB	chr2	25372243	25678577
DTNB_chr2_25372243_25678577	0/0	a0002	627	2	0	0	0	0	2	copy fasta	DTNB	chr2	25372243	25678577
DTNB_chr2_25372243_25678577	0/0	a0003	627	1	0	0	0	0	1	copy fasta	DTNB	chr2	25372243	25678577
DTNB_chr2_25372243_25678577	0/0	a0004	627	1	0	0	0	1	0	copy fasta	DTNB	chr2	25372243	25678577
DTNB_chr2_25372243_25678577	0/0	a0005	627	1	1	0	0	0	0	copy fasta	DTNB	chr2	25372243	25678577
DTWD1_chr15_49616048_49661232	1/1	a0001	304	334	68	53	149	14	48	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	a0002	304	4	1	0	0	3	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	a0003	304	1	0	1	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	a0004	304	1	0	0	0	1	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	a0005	304	1	0	0	1	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD1_chr15_49616048_49661232	0/0	a0006	304	1	1	0	0	0	0	copy fasta	DTWD1	chr15	49616048	49661232
DTWD2_chr5_118831074_118993547	1/1	a0001	298	237	85	62	47	12	29	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	a0002	298	4	0	0	3	0	1	copy fasta	DTWD2	chr5	118831074	118993547
DTWD2_chr5_118831074_118993547	0/0	a0003	7	1	1	0	0	0	0	copy fasta	DTWD2	chr5	118831074	118993547
DTX1_chr12_113051730_113103025	1/1	a0001	620	330	83	70	118	14	43	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	a0002	620	4	0	1	0	0	3	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	a0003	620	2	2	0	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	a0004	620	1	1	0	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX1_chr12_113051730_113103025	0/0	a0005	620	1	0	1	0	0	0	copy fasta	DTX1	chr12	113051730	113103025
DTX2_chr7_76456709_76510991	0/0	a0001	622	146	40	24	60	5	17	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	a0002	622	65	12	20	24	2	7	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/1	a0003	622	38	14	13	1	2	7	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	a0004	622	10	8	2	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	a0005	352	9	2	2	4	0	1	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	a0006	622	3	0	0	0	1	2	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	a0007	622	2	1	1	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	a0008	352	1	0	0	1	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	a0009	622	1	0	0	0	0	1	copy fasta	DTX2	chr7	76456709	76510991