JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DTX2_chr7_76456709_76510991	0/0	a0010	622	1	1	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	a0011	622	1	1	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	a0012	622	1	0	0	0	0	1	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	1/0	a0013	622	1	0	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX2_chr7_76456709_76510991	0/0	a0014	622	1	1	0	0	0	0	copy fasta	DTX2	chr7	76456709	76510991
DTX3L_chr3_122559338_122580203	0/1	a0001	740	269	33	53	143	10	29	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	1/0	a0002	740	179	55	28	68	8	19	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	a0003	740	10	8	2	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	a0004	740	8	0	1	7	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	a0005	740	2	0	2	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	a0006	740	1	0	0	1	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	a0007	740	1	0	0	1	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	a0008	740	1	1	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3L_chr3_122559338_122580203	0/0	a0009	740	1	1	0	0	0	0	copy fasta	DTX3L	chr3	122559338	122580203
DTX3_chr12_57599824_57614802	1/1	a0001	340	416	99	75	182	16	42	copy fasta	DTX3	chr12	57599824	57614802
DTX3_chr12_57599824_57614802	0/0	a0002	340	1	0	1	0	0	0	copy fasta	DTX3	chr12	57599824	57614802
DTX3_chr12_57599824_57614802	0/0	a0003	340	1	1	0	0	0	0	copy fasta	DTX3	chr12	57599824	57614802
DTX4_chr11_59167132_59213588	1/1	a0001	619	379	84	65	171	14	43	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	a0002	619	4	4	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	a0003	619	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	a0004	619	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	a0005	619	1	0	1	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	a0006	619	1	0	0	0	0	1	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	a0007	619	1	0	0	1	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	a0008	619	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTX4_chr11_59167132_59213588	0/0	a0009	619	1	1	0	0	0	0	copy fasta	DTX4	chr11	59167132	59213588
DTYMK_chr2_241670747_241691815	1/1	a0001	212	412	95	63	194	16	42	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/0	a0002	212	5	0	0	5	0	0	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/0	a0003	212	1	0	1	0	0	0	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/0	a0004	212	1	0	0	1	0	0	copy fasta	DTYMK	chr2	241670747	241691815
DTYMK_chr2_241670747_241691815	0/0	a0005	212	1	1	0	0	0	0	copy fasta	DTYMK	chr2	241670747	241691815
DUOX1_chr15_45124994_45170574	1/0	a0001	1551	150	30	38	69	1	11	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0002	1551	121	31	7	65	1	17	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0003	1551	48	6	16	7	8	11	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0004	1551	40	14	2	24	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0005	1551	4	4	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0006	1551	3	0	0	0	0	3	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0007	1551	2	0	0	2	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0008	1551	2	2	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0009	1551	2	0	2	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0010	1551	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/1	a0011	1551	1	0	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0012	1551	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0013	532	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0014	1551	1	0	1	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0015	1551	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0016	1551	1	0	1	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0017	1551	1	0	1	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0018	1551	1	0	0	1	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0019	1551	1	0	0	1	0	0	copy fasta	DUOX1	chr15	45124994	45170574