JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DUOX1_chr15_45124994_45170574	0/0	a0020	1551	1	0	1	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0021	1551	1	0	0	1	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0022	1551	1	0	1	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX1_chr15_45124994_45170574	0/0	a0023	1551	1	1	0	0	0	0	copy fasta	DUOX1	chr15	45124994	45170574
DUOX2_chr15_45087650_45119172	0/1	a0001	1548	128	9	42	41	10	25	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0002	1548	40	19	4	17	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0003	1548	26	23	3	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	1/0	a0004	1548	14	12	1	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0005	1548	13	2	7	0	1	3	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0006	1548	11	3	0	7	0	1	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0007	1548	7	6	1	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0008	1548	5	5	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0009	1548	4	4	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0010	1548	3	0	0	0	0	3	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0011	1548	2	0	0	2	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0012	1548	2	0	0	0	0	2	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0013	1548	2	1	1	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0014	1548	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0015	1548	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0016	1548	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0017	1548	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0018	1548	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0019	1548	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0020	1548	1	0	0	0	0	1	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0021	1548	1	0	1	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0022	1548	1	0	0	0	1	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0023	1548	1	0	1	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0024	1548	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0025	1548	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0026	1548	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0027	1548	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0028	1548	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0029	1548	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0030	1548	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0031	1548	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0032	1548	1	0	0	0	0	1	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0033	1548	1	0	1	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0034	1548	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0035	1548	1	1	0	0	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOX2_chr15_45087650_45119172	0/0	a0036	1548	1	0	0	1	0	0	copy fasta	DUOX2	chr15	45087650	45119172
DUOXA1_chr15_45112366_45134879	1/1	a0001	343	362	78	72	151	18	41	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	a0002	343	14	14	0	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	a0003	343	10	0	0	10	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	a0004	343	4	4	0	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	a0005	343	1	1	0	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	a0006	343	1	0	0	0	0	1	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	a0007	343	1	0	0	1	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	a0008	343	1	0	0	1	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	a0009	343	1	1	0	0	0	0	copy fasta	DUOXA1	chr15	45112366	45134879
DUOXA1_chr15_45112366_45134879	0/0	a0010	343	1	0	0	1	0	0	copy fasta	DUOXA1	chr15	45112366	45134879