JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
DUOXA2_chr15_45109326_45123421	0/1	a0001	320	309	46	64	143	14	41	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	1/0	a0002	320	57	52	4	0	0	0	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	0/0	a0003	320	1	0	0	0	0	1	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	0/0	a0004	320	1	0	0	1	0	0	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	0/0	a0005	320	1	0	0	1	0	0	copy fasta	DUOXA2	chr15	45109326	45123421
DUOXA2_chr15_45109326_45123421	0/0	a0006	320	1	0	0	1	0	0	copy fasta	DUOXA2	chr15	45109326	45123421
DUS1L_chr17_82052506_82070804	1/1	a0001	473	383	76	81	162	18	44	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	a0002	473	29	13	5	9	0	2	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	a0003	472	7	6	1	0	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	a0004	473	1	0	0	1	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	a0005	473	1	0	0	1	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	a0006	473	1	1	0	0	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	a0007	473	1	0	1	0	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS1L_chr17_82052506_82070804	0/0	a0008	473	1	0	0	1	0	0	copy fasta	DUS1L	chr17	82052506	82070804
DUS2_chr16_68018284_68084320	1/1	a0001	493	219	70	39	63	10	35	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	a0002	493	4	4	0	0	0	0	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	a0003	493	4	4	0	0	0	0	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	a0004	493	3	0	1	2	0	0	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	a0005	493	1	0	0	1	0	0	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	a0006	493	1	1	0	0	0	0	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	a0007	493	1	0	0	0	0	1	copy fasta	DUS2	chr16	68018284	68084320
DUS2_chr16_68018284_68084320	0/0	a0008	493	1	1	0	0	0	0	copy fasta	DUS2	chr16	68018284	68084320
DUS3L_chr19_5780140_5796163	0/0	a0001	650	183	76	12	78	4	13	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	1/1	a0002	650	173	10	55	72	10	24	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	a0003	650	2	0	2	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	a0004	650	1	0	0	1	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	a0005	650	1	1	0	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	a0006	650	1	1	0	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	a0007	650	1	0	0	0	0	1	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	a0008	650	1	0	0	1	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS3L_chr19_5780140_5796163	0/0	a0009	650	1	0	1	0	0	0	copy fasta	DUS3L	chr19	5780140	5796163
DUS4L_chr7_107558971_107583523	1/1	a0001	317	401	88	76	186	16	33	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	a0002	317	10	3	2	0	2	3	copy fasta	DUS4L	chr7	107558971	107583523
DUS4L_chr7_107558971_107583523	0/0	a0003	317	1	1	0	0	0	0	copy fasta	DUS4L	chr7	107558971	107583523
DUSP10_chr1_221696424_221747089	1/1	a0001	482	393	90	64	179	14	44	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	a0002	482	1	0	0	1	0	0	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	a0003	482	1	0	0	1	0	0	copy fasta	DUSP10	chr1	221696424	221747089
DUSP10_chr1_221696424_221747089	0/0	a0004	482	1	0	0	1	0	0	copy fasta	DUSP10	chr1	221696424	221747089
DUSP11_chr2_73757213_73785103	1/1	a0001	330	379	88	71	166	12	40	copy fasta	DUSP11	chr2	73757213	73785103
DUSP11_chr2_73757213_73785103	0/0	a0002	330	5	4	1	0	0	0	copy fasta	DUSP11	chr2	73757213	73785103
DUSP11_chr2_73757213_73785103	0/0	a0003	330	1	0	0	1	0	0	copy fasta	DUSP11	chr2	73757213	73785103
DUSP11_chr2_73757213_73785103	0/0	a0004	330	1	0	0	1	0	0	copy fasta	DUSP11	chr2	73757213	73785103
DUSP12_chr1_161744786_161762238	1/1	a0001	340	440	85	82	213	18	40	copy fasta	DUSP12	chr1	161744786	161762238
DUSP12_chr1_161744786_161762238	0/0	a0002	340	2	0	0	2	0	0	copy fasta	DUSP12	chr1	161744786	161762238
DUSP12_chr1_161744786_161762238	0/0	a0003	340	2	2	0	0	0	0	copy fasta	DUSP12	chr1	161744786	161762238
DUSP12_chr1_161744786_161762238	0/0	a0004	340	1	0	0	1	0	0	copy fasta	DUSP12	chr1	161744786	161762238
DUSP12_chr1_161744786_161762238	0/0	a0005	340	1	1	0	0	0	0	copy fasta	DUSP12	chr1	161744786	161762238
DUSP13_chr10_75089436_75104512	0/1	a0001	99	164	26	38	90	2	7	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	1/0	a0002	334	99	34	23	13	3	25	copy fasta	DUSP13	chr10	75089436	75104512
DUSP13_chr10_75089436_75104512	0/0	a0003	334	81	13	8	56	0	4	copy fasta	DUSP13	chr10	75089436	75104512