Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ADGRV1_chr5_90553797_91169437	0/0	a0029	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0030	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0031	6306	1	0	0	1	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0032	6306	1	0	0	1	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0033	6306	1	0	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0034	6306	1	0	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0035	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0036	6306	1	0	0	0	0	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0037	6306	1	0	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0038	6306	1	0	0	1	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0039	6306	1	0	0	0	0	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0040	6306	1	0	0	1	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0041	6306	1	0	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0042	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0043	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0044	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0045	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0046	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0047	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0048	6306	1	0	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0049	6306	1	0	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0050	6306	1	0	0	1	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0051	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0052	6306	1	0	0	1	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0053	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0054	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0055	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0056	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0057	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0058	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0059	6306	1	0	0	0	0	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0060	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0061	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0062	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0063	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0064	6306	1	0	0	0	0	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0065	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0066	6306	1	0	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	1/0	a0067	6306	1	0	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0068	6306	1	0	0	0	0	1	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0069	6306	1	0	0	1	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0070	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0071	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0072	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0073	6306	1	1	0	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0074	6306	1	0	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADGRV1_chr5_90553797_91169437	0/0	a0075	6306	1	0	1	0	0	0	copy fasta	ADGRV1	chr5	90553797	91169437
ADH1A_chr4_99271369_99295985	1/1	a0001	375	336	89	68	126	14	37	copy fasta	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	a0002	375	1	1	0	0	0	0	copy fasta	ADH1A	chr4	99271369	99295985
ADH1A_chr4_99271369_99295985	0/0	a0003	375	1	0	0	0	0	1	copy fasta	ADH1A	chr4	99271369	99295985